Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1690 ATGGATCCTAAAACCTCATCAACAACAAAAACAAAGCAACCCCAAGAACAACTGGTGGTACCCATACCCAACTTTCTGAACCTTCCTCAAGAAAAATCAATCATGGGTGAAAACAAACCAGCTGAAATCAAAGATTTTCAAATAGCAATTGCTGAGAAAGATGAGGGCAAGAAACAGTTAGCCCCAAAAAGAACCTCCAACAAAGACCGTCACACCAAAGTGGAAGGCCGTGGCCGAAGAATCCGGATGCCTGCTCTATGTGCGGCTAGGATTTTTCAATTGACCAGGGAATTAGGTCATAAATCCGACGGCGAGACTATCCAGTGGCTACTGCAGCAGGCGGAGCCGTCGATAATAGCCGCCACTGGTACTGGAACCATCCCTGCTTCAGCCCTAGCTGCGGCGGCGGGTTCTGTTTCTCAACAGGGGGCTTCTCTTTCCGCTGGATTGCAGCAGAAATTGGAGGAATTAGGCGGTGGCGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGGCGCCACAGCCACAGGGCTTTGGCCCTCTTCTGTCAGTGGATTAGGGTTTCAGTCATCAACTGGTATTGGTATTGCTCAATCAGCTTCTAATTTAGCTAATGAAACTTCAAATTACTTTCACAAACTTGGGTTCCCACCTTTTGACTTACCACCCCAAACCAACATGGGTCAAATGAGTTTCACCTCCATTTTAGGTGGAAACTCCCAACACTTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGAGTTATAAATCCTCAGGCATTGAACCAGATTTACCAACAGATGGGACAAGCTAGAGTTCATCAACATCAACACCAACATCAACACCATCATCAGCAGCAGCCTTCTGCTAAGGATGATTCTCAAGATTCAGGGTAG 918 47.39 MDPKTSSTTKTKQPQEQLVVPIPNFLNLPQEKSIMGENKPAEIKDFQIAIAEKDEGKKQLAPKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLQQKLEELGGGGSSRANWGNLGRPHLGATATGLWPSSVSGLGFQSSTGIGIAQSASNLANETSNYFHKLGFPPFDLPPQTNMGQMSFTSILGGNSQHLPGLELGLSQDGHIGVINPQALNQIYQQMGQARVHQHQHQHQHHHQQQPSAKDDSQDSG 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22930282 22931199 - Hsped.02g16900.1 Hepe02g1690 563191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1690 305 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Hepe02g1690 305 MobiDBLite consensus disorder prediction 54 75 - -
Hepe02g1690 305 Pfam TCP family transcription factor 65 277 IPR017887 -
Hepe02g1690 305 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 58 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe02g1690 305 MobiDBLite consensus disorder prediction 275 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1690 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1690 Hepe-Chr2:22930282 Hepe09g0125 Hepe-Chr9:998999 2.10e-36 dispersed
Hepe02g1690 Hepe-Chr2:22930282 Hepe03g1140 Hepe-Chr3:64607099 1.05e-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2449 . 39 245 TCP Transcription Factor Family AT5G23280 65.2 1.6e-67 253.1
Hepe01g0906 . 114 332 TCP Transcription Factor Family AT5G23280 58.9 2.5e-60 229.2
Hepe03g0481 . 1 330 TCP Transcription Factor Family AT2G45680 50.1 5.0e-70 261.9
Hepe09g0125 . 35 174 TCP Transcription Factor Family AT3G47620 63.0 1.6e-42 171.0
Hepe07g2519 . 103 204 TCP Transcription Factor Family AT3G47620 82.4 3.7e-39 159.8
Hepe10g1486 . 143 234 TCP Transcription Factor Family AT3G47620 84.9 5.9e-37 152.5
Hepe09g0125 . 90 172 TCP Transcription Factor Family AT1G69690 95.2 1.0e-37 154.5
Hepe02g1690 . 42 305 TCP Transcription Factor Family AT3G27010 56.4 8.3e-61 231.1
Hepe03g1140 . 29 261 TCP Transcription Factor Family AT3G27010 52.6 3.7e-53 205.7
Hepe02g2449 . 9 244 TCP Transcription Factor Family AT5G08330 57.7 6.6e-66 247.7
Hepe01g0906 . 114 330 TCP Transcription Factor Family AT5G08330 57.9 6.1e-56 214.5
Hepe09g0277 . 29 123 TCP Transcription Factor Family AT5G60970 78.1 1.1e-37 154.5
Hepe02g0930 . 37 149 TCP Transcription Factor Family AT3G02150 67.5 7.3e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55056 PF03634 TCP 2.10E-30 No_clan Hepe TF