Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1696 ATGGATAATTATCAGATGTTTTTCCCTTGCTCCGGCGCCGGCGGCGGATTGTCGGCTTATCATCATGCCGATATGTCGTCCGGCAGCGGCGGCGGTTCTGATATGTTCGGGGATTTTCACGGCGGCGATCTGCAGGCAAGTGGGTTTTTGGGGCTGAAGACGGAGGTGGATGCCGCTGCGGTGGAAGCCGACGGGAACAGTGGCGGCGGAAAGAAGAAGGGGGAGAAGAAGGTGAGGAAACCGAGATATGCTTTTCAGACAAGGAGCCAAGTTGACATCCTTGACGATGGATATCGTTGGAGAAAATATGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGGTGCACATATCAAGGGTGCAATGTGAAGAAACAAGTGCAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGCATGCACACACACTCCATTGATAAGCCAACAGATAACTTTGAACAAATCTTGAGTAGAATGCAAATTTACAGTACACCTTTTTGA 525 48.19 MDNYQMFFPCSGAGGGLSAYHHADMSSGSGGGSDMFGDFHGGDLQASGFLGLKTEVDAAAVEADGNSGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23064225 23066686 + Hsped.02g16960.1 Hepe02g1696 563197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1696 174 ProSiteProfiles WRKY domain profile. 89 154 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1696 174 FunFam WRKY transcription factor 57 80 154 - -
Hepe02g1696 174 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 67 154 IPR044810 GO:0003700(InterPro)
Hepe02g1696 174 SMART WRKY_cls 94 153 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1696 174 Gene3D WRKY domain 78 154 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1696 174 SUPERFAMILY WRKY DNA-binding domain 86 153 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1696 174 Pfam WRKY DNA -binding domain 95 151 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1696 Hepe-Chr2:23064225 Hepe02g3408 Hepe-Chr2:83519531 1.28e-53 dispersed
Hepe02g1696 Hepe-Chr2:23064225 Hepe05g1187 Hepe-Chr5:57725446 2.15e-54 wgd
Hepe02g1696 Hepe-Chr2:23064225 HepeContig66g0148 Hepe-ChrContig66:11912492 1.41e-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55057 PF03106 WRKY 5.50E-26 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1696 - - - 0.0