Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe02g1698 | ATGGATTGGGGTTGGGGAAAAATTTCTGGGGAAAAAACTACTTTCCGGGAAAACAAACACAACCCCACAAGTTTTTCTGACTCGATTGGCTCAAATAATGAAGAAGAAACGATTCTCAAGGGTTCGAGTCAAGAAAGTTCTTCCTCTCATGGATCTTCCAAAAGGTCTAGATTGCTCCATGGGAGCCAAAATCAGACGTGTTTGGTGGATGGTTGTGACACTGATTTGAGCAATTGCAAGGATTATCATCGGCGCCATAGGGTTTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTGAGGGGCGAGGAGAAGCGCTTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTGAAGAGGAGCTGTAGAAAGAGGCTTGATGGGCACAATCGCCGCAGGAGGAAACCTCAGCCTGAATCCTTGTTTATGAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAGTTCAGTGATCAACAGATTCATGTTCCTGATGAATTTGGTAGGAGTTTATGGCCTGTGAGAACTGAAGAGAAATCTATGGTTCCACCAAATTCCTCTGCTTACTTTAGTTATGGAGGAGACAACAAACATTTGCCTTTTTTCCTGCATAAAAATGGCACAAAACAAGGCAAGCAAATGGTTTCCTCTCAGTTGTCCTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGGAAGTGAGGTGGGCAGCCAGAAACAGTTGCCTACCGATACTTCGCCTGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGATGCTGGCTTGAGCTCTTTCGTTCAGTCTCATCTGAGCCTTCCAGTCCAAACTCAAGAGACTGAGCTGCATTTCAGTAGTCTAAGTGACTTATCTGCCTCCTTTGGCTCCTCCAAGGACAAGTCTGTTTGTAAAACCAATCTTCATAGTGAGTTGGTGCTTGAAATGGAGGAGGAATCTGATGGCTTGTTCCAAAGTGAGGTTCCACACAAGTTTCCCATTTCTTGGGAGTAG | 1059 | 45.51 | MDWGWGKISGEKTTFRENKHNPTSFSDSIGSNNEEETILKGSSQESSSSHGSSKRSRLLHGSQNQTCLVDGCDTDLSNCKDYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKGPIVLQFSDQQIHVPDEFGRSLWPVRTEEKSMVPPNSSAYFSYGGDNKHLPFFLHKNGTKQGKQMVSSQLSFNQQLPDAISQGSEVGSQKQLPTDTSPEDSGCALYLLSSHPVQALPDAGLSSFVQSHLSLPVQTQETELHFSSLSDLSASFGSSKDKSVCKTNLHSELVLEMEEESDGLFQSEVPHKFPISWE | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 23185707 | 23187348 | + | Hsped.02g16980.1 | Hepe02g1698 | 563199 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe02g1698 | 352 | Pfam | SBP domain | 67 | 140 | IPR004333 | GO:0003677(InterPro) | |
| Hepe02g1698 | 352 | Gene3D | - | 59 | 128 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Hepe02g1698 | 352 | FunFam | Squamosa promoter-binding-like protein 14 | 59 | 128 | - | - | |
| Hepe02g1698 | 352 | ProSiteProfiles | Zinc finger SBP-type profile. | 64 | 141 | IPR004333 | GO:0003677(InterPro) | |
| Hepe02g1698 | 352 | MobiDBLite | consensus disorder prediction | 19 | 60 | - | - | |
| Hepe02g1698 | 352 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 35 | 298 | IPR044817 | GO:0003677(InterPro) | |
| Hepe02g1698 | 352 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Hepe02g1698 | 352 | SUPERFAMILY | SBT domain | 66 | 146 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe02g1698 | Hepe-Chr2:23185707 | Hepe07g2119 | Hepe-Chr7:65507794 | 1.08e-41 | dispersed | |
| Hepe02g1698 | Hepe-Chr2:23185707 | Hepe03g1119 | Hepe-Chr3:64225248 | 2.12e-47 | wgd | |
| Hepe02g1698 | Hepe-Chr2:23185707 | Hepe09g0038 | Hepe-Chr9:324789 | 7.30e-44 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 55058 | PF03110 | SBP | 1.70E-30 | No_clan | Hepe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe02g1698 | - | - | - | 0.0 |