Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1784 ATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGCCTGTCTATGGATTCCCCTGTGGACCCTTCCGATTCCTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTCAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTCACCGACGATTCGGGGAGTAGTGAGAGGACATATCGTTGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCTTTGAAGAAGATTAATATATTTGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAGATAAGGACACTATGTGAAGCCCCCTGTTCCGAGGGTCTCGTGGAGTTTCATGGAGCATTTTATACCCCCGACTCTGGACAAATAAGCATAGCTTTGGAGTACATGGATGGAGGGTCGTTGGCAGATGTCCTGCATTTGAAGAAATGTATACCCGAGCCTGTTCTTTCATCTATGTTTCAGAAACTTCTTCGTGGTCTAAGCTACTTGCATGGAGAAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCGAAAATTACGGATTTCGGCATAAGTGCTGGCTTAGAGAATTCGATGGCAATGTGTGCTACTTTCGTCGGAACTGTCACATACATGTCGCCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCGGCTGATATCTGGAGCCTAGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCATCTCCATCGCCGTCAAAACATAAGTTTTCACCAGAGTTTTGCTCGTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACGGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGGCAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTTTGTACCATGAAAGCTCAACTTTGAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGACATCCGAACTACATTAGCGGGAGACTGGCCTCTTGAAAAACTAGTTCACGTCGTCGAAAAACTCCAATGTCGAGCTCACGGTCGAGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCATTGGAAATCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGATTGCCAAATTTTAAGGATCTCTCGATCGACATGGCGAGTAAGAAAATGGGATCCTTCCGGGAGCAATTCATCATCGAACCGAGCAACCTCATCGGTCGCTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG 1557 43.8 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLTDDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLHLKKCIPEPVLSSMFQKLLRGLSYLHGERHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPIQRMKDLADMLAIHYYLLFDGPDEFWHHTKALYHESSTLSFSGKQFSGPNDIFAKLSDIRTTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLSIDMASKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25901475 25906872 - Hsped.02g17840.1 Hepe02g1784 563285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1784 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Hepe02g1784 518 Gene3D - 366 516 - -
Hepe02g1784 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1784 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Hepe02g1784 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 63 372 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Hepe02g1784 518 CDD PKc_MAPKK_plant_like 84 343 - -
Hepe02g1784 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1784 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Hepe02g1784 518 SUPERFAMILY Protein kinase-like (PK-like) 85 366 IPR011009 -
Hepe02g1784 518 Gene3D Transferase(Phosphotransferase) domain 1 165 365 - -
Hepe02g1784 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Hepe02g1784 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Hepe02g1784 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g1784 518 SMART serkin_6 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1784 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524(InterPro)
Hepe02g1784 518 Gene3D Phosphorylase Kinase; domain 1 57 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1784 K20607 - - csv:101217978 1004.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1784 Hepe-Chr2:25901475 Hepe08g2630 Hepe-Chr8:68262406 7.82e-77 dispersed
Hepe02g1587 Hepe-Chr2:21058760 Hepe02g1784 Hepe-Chr2:25901475 9.33e-44 transposed
Hepe02g1784 Hepe-Chr2:25901475 Hepe05g1338 Hepe-Chr5:61764598 4.10e-17 wgd
Hepe02g1784 Hepe-Chr2:25901475 Hepe06g0686 Hepe-Chr6:50954140 2.69e-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0895 . 30 355 MAP Kinase Kinase Gene Family AT4G26070 69.9 3.3e-135 478.4
Hepe08g2677 . 48 372 MAP Kinase Kinase Gene Family AT4G26070 66.3 4.0e-125 444.9
Hepe08g2630 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.9 2.0e-108 389.4
Hepe09g0895 . 1 328 MAP Kinase Kinase Gene Family AT4G29810 67.4 3.7e-131 464.9
Hepe08g2677 . 22 346 MAP Kinase Kinase Gene Family AT4G29810 61.6 1.8e-114 409.5
Hepe08g2630 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 60.0 1.6e-110 396.4
Hepe02g1784 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.3 1.4e-227 785.8
Hepe02g1587 . 1 375 MAP Kinase Kinase Gene Family AT1G51660 66.3 2.4e-128 455.7
Hepe07g2336 . 5 322 MAP Kinase Kinase Gene Family AT1G51660 52.0 2.8e-84 309.3
Hepe02g1587 . 1 375 MAP Kinase Kinase Gene Family AT3G21220 67.0 1.9e-130 462.6
Hepe07g2336 . 49 318 MAP Kinase Kinase Gene Family AT3G21220 54.8 6.6e-83 304.7
Hepe08g2630 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 3.8e-171 597.8
Hepe09g0895 . 14 354 MAP Kinase Kinase Gene Family AT5G56580 59.6 4.9e-118 421.4
Hepe08g2677 . 32 361 MAP Kinase Kinase Gene Family AT5G56580 56.3 1.5e-106 383.3
Hepe07g2336 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.1 4.4e-107 384.8
Hepe07g2336 . 1 304 MAP Kinase Kinase Gene Family AT3G06230 51.0 3.7e-79 292.0
Hepe07g2336 . 1 316 MAP Kinase Kinase Gene Family AT1G73500 64.5 3.9e-111 398.3
Hepe02g1587 . 84 343 MAP Kinase Kinase Gene Family AT1G73500 52.5 2.2e-77 286.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72575 PF00069 Pkinase 5.90E-60 CL0016 Hepe PK