Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1786 ATGTCTTCTTCCACCTACTCCAATTCTCCTTGTGCAGCCTGCAAGTTCCTACGGCGAAAATGTCTACCGGATTGCGTTTTCGCCCCGTATTTCCCGCCAGAGGAGCCGCAAAAGTTCGCCAACGTCCACAAGATCTTCGGCGCCAGCAATGTCAGCAAACTACTGAACGAAGTCCAGCCGCACCAGCGGGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCATCCTCCAAAGGCAAGTCATCAAGCTCCAGAAAGAGCTCGACGCCACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCGCCCCTTCCCCATCCTCGTCGTCGCAGTACGCTCGAAGGTCGTCGTCGACGAGCCACGAGGGAACCTCATCCACCTCTAGCTATGGCCACTACTATCCTGGTCTCTACTTTTCTCCATGGAGTAACAACAACAATGGCCCTTGTGGAGATGGCCATGACAAACGAGAATACAAGTAA 534 56.37 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPSPSSSSQYARRSSSTSHEGTSSTSSYGHYYPGLYFSPWSNNNNGPCGDGHDKREYK 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26266403 26266936 + Hsped.02g17860.1 Hepe02g1786 563287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1786 177 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Hepe02g1786 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 127 - -
Hepe02g1786 177 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Hepe02g1786 177 Coils Coil 89 109 - -
Hepe02g1786 177 MobiDBLite consensus disorder prediction 120 177 - -
Hepe02g1786 177 MobiDBLite consensus disorder prediction 120 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1786 Hepe-Chr2:26266403 Hepe09g0225 Hepe-Chr9:1949857 1.72e-73 dispersed
Hepe02g1786 Hepe-Chr2:26266403 Hepe02g3080 Hepe-Chr2:79972513 7.93e-73 wgd
Hepe02g1786 Hepe-Chr2:26266403 Hepe07g2205 Hepe-Chr7:66445971 2.85e-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55060 PF03195 LOB 2.40E-42 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1786 - - - 0.0