Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1823 ATGTTTGTTTTATTTTCAGTATTTGGTTTCTTCAGGATGATGCTGAAGGAGAAAGCAGGGACTTTTAGCCTGGTTCTTGAAAGACCTTTCACACCTTTTCCGATTCAACAGCTTCTGCTTTCGAACGATTTAGATATTTTATTTAACAGAGGTCGAGTACCTATTGCTACTTGGAAGAAAGAAGTTTTGGCATCAAATTTACGAACATCTGATGCAAGCAGTGGGAATTCTGGCTTTGCGACCTTCTCCTCCAAGTTCTCAACATCACAAGGTTGGAAACTTCTTAACGATCAAAATGGAGATGTAAAGTCTCATACGCAGAGAAACATTCTCACACCTCAAATCAACCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAACTTCCCCCTAGATGAATATGTCAAGGCATTAGAACGGTCTAATGGGGAGCTATATTATGATCACTCCCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGGTCATGTATACAGACTGAAGCAGACGTAGAGGCTTTGTCAAATAACGTGGGAGTCACGGCTGTACTGAATTTTCAAGGTTCAACTGAGGCAGAAAACTGGGGGATTAATTCCCAATTAATCAACGAATCATGCCAAAAATTCGATATTCTCATGATCAACTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTGTAACTTGTACCACTGGTTTTGATCGATCTCCAGCTAGTGTGATTGCATATTTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCACCTTGCATTCCTGCAAACCGGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGCCATGATGGACCTCCCACTCATGCCGTTACCTTCGTTTGGAATGGACAAGAGGGGGAGGAAGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCTGTCAAGGCTAGTCACAAGGGTGGGCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTATAAGTTCATCACAAATGATCATTGGAGGCACTCAACAAATTCACCTGCTGAAAGAGACGATAGTGGGAATGTCAACAATATAATTGTCATCGGCGACATTGCCAGTGTTAGGCCCAAAGTTCAACCGCAAATAAAAGATGCAAATATTGTGAAAGTAATTGAAAGGCCACTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGACTAACTCCCAAGTAG 1389 41.47 MFVLFSVFGFFRMMLKEKAGTFSLVLERPFTPFPIQQLLLSNDLDILFNRGRVPIATWKKEVLASNLRTSDASSGNSGFATFSSKFSTSQGWKLLNDQNGDVKSHTQRNILTPQINQLVGIFTEEEPGDGEWAHGNFPLDEYVKALERSNGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALSNNVGVTAVLNFQGSTEAENWGINSQLINESCQKFDILMINYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRSPASVIAYLHWMTDTSLHAAYNFITTLHSCKPDRPAIAWATWDLIAMVENGSHDGPPTHAVTFVWNGQEGEEVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKFITNDHWRHSTNSPAERDDSGNVNNIIVIGDIASVRPKVQPQIKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27741199 27746600 + Hsped.02g18230.1 Hepe02g1823 563324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1823 462 Pfam Dual specificity phosphatase, catalytic domain 171 293 IPR000340 GO:0016311(InterPro)
Hepe02g1823 462 CDD E_set_AMPKbeta_like_N 329 408 - -
Hepe02g1823 462 Pfam Glycogen recognition site of AMP-activated protein kinase 329 409 IPR032640 -
Hepe02g1823 462 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 8 456 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Hepe02g1823 462 Gene3D Immunoglobulins 316 412 IPR013783 -
Hepe02g1823 462 CDD DSP_laforin-like 161 307 IPR045204 GO:0019203(InterPro)
Hepe02g1823 462 ProSiteProfiles Dual specificity protein phosphatase domain profile. 162 318 IPR020422 GO:0006470(InterPro)
Hepe02g1823 462 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 154 297 IPR029021 -
Hepe02g1823 462 Gene3D Protein tyrosine phosphatase superfamily 155 425 IPR029021 -
Hepe02g1823 462 SUPERFAMILY E set domains 326 409 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1823 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1353 . . Bda01g01276 . . . . . . Cmo11g01690 Cma11g01431 . Car11g01375 . . . . . . . . . . . Cla10g01351 Cam10g1259 Cec10g1431 Cco10g1406 Clacu10g1409 Cmu10g2179 Cre10g1562 Cone11ag0116 Cone18ag1361 . . . . Chy04g01457 Cme04g01886 . Blo18g00335 . . . . Bma01g00978 . . . . . . . . . . Bhi11g01648 . . . Hepe02g1823 . . . . . . . . . . Csa03g03940 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe01g0559 . 79 386 Protein tyrosine phosphatase (PTP) family AT1G71860 66.5 6.6e-120 427.6
Hepe09g0013 . 1 864 Protein tyrosine phosphatase (PTP) family AT5G23720 62.8 5.1e-300 1027.3
Hepe03g0164 . 97 236 Protein tyrosine phosphatase (PTP) family AT3G06110 51.1 1.2e-37 153.3
Hepe02g0068 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 3.0e-71 265.0
Hepe01g1069 . 92 372 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.1e-112 403.3
Hepe01g0659 . 4 278 Protein tyrosine phosphatase (PTP) family AT3G10940 65.8 5.3e-107 384.4
Hepe02g1823 . 14 462 Protein tyrosine phosphatase (PTP) family AT3G01510 73.7 1.9e-204 708.8
Hepe08g0587 . 10 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 7.0e-74 274.2
Hepe02g0073 . 6 233 Protein tyrosine phosphatase (PTP) family AT2G32960 59.6 3.0e-72 268.9
Hepe09g1309 . 14 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.8 4.4e-52 201.8
Hepe06g1113 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 6.1e-102 367.9
Hepe08g2635 . 10 229 Protein tyrosine phosphatase (PTP) family AT2G35680 60.1 1.9e-79 293.1
Hepe08g2635 . 27 216 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 7.7e-46 180.6
Hepe08g0587 . 43 211 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 3.4e-76 281.6
Hepe02g0073 . 36 234 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.1e-69 260.0
Hepe09g1309 . 12 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.7 6.7e-56 214.2
Hepe09g1309 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 7.5e-79 290.4
Hepe08g0587 . 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 59.9 7.5e-55 210.7
Hepe01g0838 . 1 184 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 2.2e-62 237.7
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G19420 63.4 1.4e-216 749.6
Hepe04g1268 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 61.7 5.7e-199 691.0
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe08g0239 . 62 244 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.7e-67 253.1
Hepe06g1037 . 23 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.3 2.3e-108 389.0
Hepe04g0778 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 69.0 6.1e-279 956.8
Hepe04g0778 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.1e-253 872.8
Hepe04g0778 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 55.5 1.4e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35