Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1854 ATGGAGTCTGGCCGGTTCTTGTTCAATCCGCCGTCTTGCGGCGGCAACATGCTTTACCTTGGCGGAGCCGGTGGTGGCGATCCGTTTCTGCGAGGAGGAAGAACGATGATGAGCATGAGCATGCAGGAGAGTCCAAAGGGGATGCCATTTTTCAGAACACCCGAGGATCTTTACGACGATGAATATTACGACGATCTCTGCCCCGAGAAGAAGCGCCGTCTCACCCACGACCAGGTTGAAATGCTGGAGAAGAACTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTGGGGCTGCAGCAGAGGCAGGTAGCCGTGTGGTTCCAGAACCGCCGCGCTCGGTGGAAGACAAAGCAGCTCGAAAGGGACTACGATGTTCTTAAGGCTTCATATGATCTGCTTATGTCTAACTATGACTCCGTTGCCAAAGAGAATGCAGTGCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCTAGCTAAAGAGCTGGACGGAGAAGAAGCACCAGTTCCATGTAATACAGAGCCTCTTCTAGCAGACATCACCTACGTCTCCGCCCCACACGCCGGCAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGTGATAGCAGTGTAGTGATCGACGATAACTGTCCACAACTGATCGACAGCGGTGATTCTTACTTCCTCAGCAACGAGTATCCTCACTGTGCACCTCTGCCAACTGGGATGCAAATGGAACATGATTATAAGAATGACAATAGCAACTACTTGTTCTCAGATTTGTTTGCAGCAACAAACCAACAGAATCAGGAGGGAGGAGGGTCTCCAGCTTGGTGGGCATGGCCTTAG 855 51.11 MESGRFLFNPPSCGGNMLYLGGAGGGDPFLRGGRTMMSMSMQESPKGMPFFRTPEDLYDDEYYDDLCPEKKRRLTHDQVEMLEKNFEEENKLEPERKSQLAKKLGLQQRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSVAKENAVLKSEVASLTEKCLAKELDGEEAPVPCNTEPLLADITYVSAPHAGRKAEDRLSSGSDSSVVIDDNCPQLIDSGDSYFLSNEYPHCAPLPTGMQMEHDYKNDNSNYLFSDLFAATNQQNQEGGGSPAWWAWP 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28534171 28537261 + Hsped.02g18540.1 Hepe02g1854 563355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1854 284 ProSiteProfiles 'Homeobox' domain profile. 69 125 IPR001356 GO:0003677(InterPro)
Hepe02g1854 284 Pfam Homeobox associated leucine zipper 125 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1854 284 SUPERFAMILY Homeodomain-like 68 127 IPR009057 -
Hepe02g1854 284 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe02g1854 284 CDD homeodomain 70 126 IPR001356 GO:0003677(InterPro)
Hepe02g1854 284 Coils Coil 145 165 - -
Hepe02g1854 284 SMART HOX_1 68 129 IPR001356 GO:0003677(InterPro)
Hepe02g1854 284 Gene3D - 65 131 - -
Hepe02g1854 284 PRINTS Lambda-repressor HTH signature 96 105 IPR000047 GO:0003677(InterPro)
Hepe02g1854 284 PRINTS Lambda-repressor HTH signature 105 121 IPR000047 GO:0003677(InterPro)
Hepe02g1854 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 216 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Hepe02g1854 284 FunFam homeobox-leucine zipper protein ATHB-6-like 73 119 - -
Hepe02g1854 284 Pfam Homeodomain 70 123 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1854 Hepe-Chr2:28534171 Hepe07g2281 Hepe-Chr7:67135557 2.69e-35 dispersed
Hepe02g1854 Hepe-Chr2:28534171 Hepe02g3113 Hepe-Chr2:80280146 1.22e-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55062 PF00046 Homeodomain 5.80E-18 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1854 K09338 - csv:101212142 414.846