Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g1854 | ATGGAGTCTGGCCGGTTCTTGTTCAATCCGCCGTCTTGCGGCGGCAACATGCTTTACCTTGGCGGAGCCGGTGGTGGCGATCCGTTTCTGCGAGGAGGAAGAACGATGATGAGCATGAGCATGCAGGAGAGTCCAAAGGGGATGCCATTTTTCAGAACACCCGAGGATCTTTACGACGATGAATATTACGACGATCTCTGCCCCGAGAAGAAGCGCCGTCTCACCCACGACCAGGTTGAAATGCTGGAGAAGAACTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTGGGGCTGCAGCAGAGGCAGGTAGCCGTGTGGTTCCAGAACCGCCGCGCTCGGTGGAAGACAAAGCAGCTCGAAAGGGACTACGATGTTCTTAAGGCTTCATATGATCTGCTTATGTCTAACTATGACTCCGTTGCCAAAGAGAATGCAGTGCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCTAGCTAAAGAGCTGGACGGAGAAGAAGCACCAGTTCCATGTAATACAGAGCCTCTTCTAGCAGACATCACCTACGTCTCCGCCCCACACGCCGGCAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGTGATAGCAGTGTAGTGATCGACGATAACTGTCCACAACTGATCGACAGCGGTGATTCTTACTTCCTCAGCAACGAGTATCCTCACTGTGCACCTCTGCCAACTGGGATGCAAATGGAACATGATTATAAGAATGACAATAGCAACTACTTGTTCTCAGATTTGTTTGCAGCAACAAACCAACAGAATCAGGAGGGAGGAGGGTCTCCAGCTTGGTGGGCATGGCCTTAG | 855 | 51.11 | MESGRFLFNPPSCGGNMLYLGGAGGGDPFLRGGRTMMSMSMQESPKGMPFFRTPEDLYDDEYYDDLCPEKKRRLTHDQVEMLEKNFEEENKLEPERKSQLAKKLGLQQRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSVAKENAVLKSEVASLTEKCLAKELDGEEAPVPCNTEPLLADITYVSAPHAGRKAEDRLSSGSDSSVVIDDNCPQLIDSGDSYFLSNEYPHCAPLPTGMQMEHDYKNDNSNYLFSDLFAATNQQNQEGGGSPAWWAWP | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 28534171 | 28537261 | + | Hsped.02g18540.1 | Hepe02g1854 | 563355 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g1854 | 284 | ProSiteProfiles | 'Homeobox' domain profile. | 69 | 125 | IPR001356 | GO:0003677(InterPro) | |
Hepe02g1854 | 284 | Pfam | Homeobox associated leucine zipper | 125 | 165 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe02g1854 | 284 | SUPERFAMILY | Homeodomain-like | 68 | 127 | IPR009057 | - | |
Hepe02g1854 | 284 | ProSitePatterns | 'Homeobox' domain signature. | 100 | 123 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Hepe02g1854 | 284 | CDD | homeodomain | 70 | 126 | IPR001356 | GO:0003677(InterPro) | |
Hepe02g1854 | 284 | Coils | Coil | 145 | 165 | - | - | |
Hepe02g1854 | 284 | SMART | HOX_1 | 68 | 129 | IPR001356 | GO:0003677(InterPro) | |
Hepe02g1854 | 284 | Gene3D | - | 65 | 131 | - | - | |
Hepe02g1854 | 284 | PRINTS | Lambda-repressor HTH signature | 96 | 105 | IPR000047 | GO:0003677(InterPro) | |
Hepe02g1854 | 284 | PRINTS | Lambda-repressor HTH signature | 105 | 121 | IPR000047 | GO:0003677(InterPro) | |
Hepe02g1854 | 284 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 54 | 216 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Hepe02g1854 | 284 | FunFam | homeobox-leucine zipper protein ATHB-6-like | 73 | 119 | - | - | |
Hepe02g1854 | 284 | Pfam | Homeodomain | 70 | 123 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g1854 | Hepe-Chr2:28534171 | Hepe07g2281 | Hepe-Chr7:67135557 | 2.69e-35 | dispersed | |
Hepe02g1854 | Hepe-Chr2:28534171 | Hepe02g3113 | Hepe-Chr2:80280146 | 1.22e-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55062 | PF00046 | Homeodomain | 5.80E-18 | CL0123 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g1854 | K09338 | - | csv:101212142 | 414.846 |