Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1860 ATGGTTTTCTTTGTTTTGAAGGTGGCTCTTGGGCTGCCATGTCTTTATACCTTGTGGAATGAGGGAAGTTGTGGGGTTATGGGGAATGTGGTGTCTACAAAACCGCCATGGCCAAACATCGAAGCTATTGGCTATTACACATCCACTTGGCTCCTCCCCCATTTTGGTTGCACCAACCCAATTATATCCCCATTTCGTCTTAAGCTTTTCATCTTCTTTCCTCTTCTTTCTTCTTCCTCCTCTTTCCATCAACCCTCTATCTCACACACATATTTCTCGCCGGGGTACTCGACAAAACCCCGGAATCCGCCATGGAAGATGAATAGAATCAGCCCCTTTCGGCGATACCTACTCGGGTCATCCTCCGATTCCGTGAAGACCGCAGTCGCCGCCGCCGCCGCCGCCACCGACGAACATCCGAATTACATCCTCCTCCGGTACCAAATCCTCGATCCTGACAGCGACATCGTCGCGCAATGGAACCGCGTGTTTCTAGTGACATGCCTGGTGGCATTGTTCATCGATCCGCTGTATTTCTACACGTCGTCGGTGGGCGGGCCGGCGTGCATGAGGAGCGATATGAAGGTGGCAGTGTGGATCACGTTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTGCACATGGTGCTCAAGTTTCGAACGGCGTATGTGGCTCCGAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAGAGCAATTGCTCACCGTTATTTGAAATCTGATTTTGTTATTGATCTCGCCGCTAGTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGACACTCAAGAGTGGATCATACCAACAACACAATCGCTCTCCTTGTTCTCATCCAATACGTTCCAAGGTTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCCTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCCAGTCATGTTTTGGGATCTACATGGTATTTGTTGTCCATAGGGAGACAGTTCTCTTGCTGGAAATCAGAGTGTGAAAAGGAAAATGTCCAAAATGTTCTAACATGTCTTCCAATATTCTTGGATTGCAACAGTTTGAATATTACTGAACGACAACATTGGCTCAATGCCACTCATATTACTTCCAAATGCGATCCGAGGAATGAACATATAAAGTTCAAATTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCACACATTTCATTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCCGAAATTTAAGTTCATATGGACAAACTTTGGATACAACAACGTATGCTGGAGAGACGTTATTTTGCATATCAACCTGCATTTTTGGGTTGATACTAACTTCACAACTCATTGGAAACATGCAGACATATTTGCAATCGATGACAGTAAGACTTGAAGAATGGAGGATAAAGCGAAGGGACACTGAAGAATGGATGAGACGTCGGCAATTACCTCCCGATTTGCAAGAACGAGTTCGTCTATTCGTTCAATATAAATGGATGGCGACGAGAGGAGTTAATGAAGAATCCATATTGCGTTCGTTGTCTGTAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCGCTCGTTCGTCGTGTTCCTTTCTTCTCACAAATGGATGATCAGCTTCTCGATGCCATATGCGAACGTCTCGTCTCGTCTTTGTGTACTCAAGGAACGTACATTGTGCGAGAGGATGATCCAGTTAACGAAATGTTGTTTATTATAAGAGGAAAACTAGAGAGCTCCACAACAAATGGTGGTCGATCTGGATTTTTCAACTCCATCACACTAAAATCAGGTGATTTTTGTGGTGAAGAACTATTGACATGGGCCTTGATGCCAAGTTCTAGTTTAAATATGCCTTCTTCTACTCGATCTGTCCGAGCGCTTACAGAAGTTGAAGCTTTCGCTCTTCGAGCGGAGGACCTCAAGTTCGTCGCCGGTCAATTCAAACGCCTACATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGCTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGCTTAGCATTGAGACAGAGCTTATGCTATCTAGATTCAATAGACGAACACTATAACGAATACGATATCGAGCTAGCAGAAGAAAATTACGACGACGATGACACCGACATTGACAACAATATTTCTTCTGCAGACGACATGAACAAAACTCAACATCTAGGGGCCACATTTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAAAGGAATTAATCAAAAGGGTAAAACATCCAAACCCACCAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2445 44.66 MVFFVLKVALGLPCLYTLWNEGSCGVMGNVVSTKPPWPNIEAIGYYTSTWLLPHFGCTNPIISPFRLKLFIFFPLLSSSSSFHQPSISHTYFSPGYSTKPRNPPWKMNRISPFRRYLLGSSSDSVKTAVAAAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLVALFIDPLYFYTSSVGGPACMRSDMKVAVWITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDARAIAHRYLKSDFVIDLAASLPLPQIVMWLVIPATRHSRVDHTNNTIALLVLIQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECEKENVQNVLTCLPIFLDCNSLNITERQHWLNATHITSKCDPRNEHIKFKFGMFSDAFTNDVASTHFIAKYFYCLWWGLRNLSSYGQTLDTTTYAGETLFCISTCIFGLILTSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRLFVQYKWMATRGVNEESILRSLSVDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGKLESSTTNGGRSGFFNSITLKSGDFCGEELLTWALMPSSSLNMPSSTRSVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKSLALRQSLCYLDSIDEHYNEYDIELAEENYDDDDTDIDNNISSADDMNKTQHLGATFLASKFAANTRKGINQKGKTSKPTSLKMPKLFKPDEPDFSMDG 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28925007 28929154 - Hsped.02g18600.1 Hepe02g1860 563361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1860 814 SMART cnmp_10 558 689 IPR000595 -
Hepe02g1860 814 MobiDBLite consensus disorder prediction 783 814 - -
Hepe02g1860 814 Pfam Cyclic nucleotide-binding domain 581 668 IPR000595 -
Hepe02g1860 814 ProSiteProfiles cAMP/cGMP binding motif profile. 558 688 IPR000595 -
Hepe02g1860 814 SUPERFAMILY cAMP-binding domain-like 488 683 IPR018490 -
Hepe02g1860 814 Gene3D Helix hairpin bin 486 549 - -
Hepe02g1860 814 Gene3D Jelly Rolls 556 676 IPR014710 -
Hepe02g1860 814 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 144 793 - -
Hepe02g1860 814 FunFam Cyclic nucleotide-gated ion channel 1 556 674 - -
Hepe02g1860 814 SUPERFAMILY Voltage-gated potassium channels 151 480 - -
Hepe02g1860 814 Pfam Ion transport protein 160 485 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1860 814 CDD CAP_ED 558 689 IPR000595 -
Hepe02g1860 814 Gene3D - 163 483 - -
Hepe02g1860 814 MobiDBLite consensus disorder prediction 800 814 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1860 Hepe-Chr2:28925007 Hepe08g0898 Hepe-Chr8:8194439 3.01e-241 dispersed
Hepe02g1860 Hepe-Chr2:28925007 Hepe02g1861 Hepe-Chr2:28968830 6.55e-13 tandem
Hepe01g2096 Hepe-Chr1:85570136 Hepe02g1860 Hepe-Chr2:28925007 8.99e-273 transposed
Hepe02g1882 Hepe-Chr2:30260695 Hepe02g1860 Hepe-Chr2:28925007 4.30e-10 transposed
Hepe09g0522 Hepe-Chr9:4885919 Hepe02g1860 Hepe-Chr2:28925007 9.80e-295 transposed
Hepe02g1860 Hepe-Chr2:28925007 Hepe06g0783 Hepe-Chr6:54472140 9.16e-211 wgd
Hepe02g1860 Hepe-Chr2:28925007 Hepe09g0191 Hepe-Chr9:1516181 6.20e-317 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1860 K05391 - csv:101216651 1254.97