Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1898 ATGATGACAGGTTGTAGAATCAAGGTTGTGATGATGTTGATTTCAATGGTTGTAATGTTGCCAACTCTCAGAGCTGGCATTGAATTTGATGACTTTTTGTTGCAAAAGGCTGAGGAAGCCAAACAAGATTCCCTTGAAGCCTTCCACCCTGACCCCATGAATGTCACTGACCATTTAAATCATCATGTTCATTTAGCTTTGGAGGTAAGCAATAACACTAGGAGGAGCCTAAGAAAATACAATGGGCCATGTTTGGCCGCAAACCCGATCGATCGCTGCTGGCGTTGTGACCCAAAATGGGCCAAGAACCGTAAGAAGCTTGCCAAATGCGTGCTCGGTTTTGGTAGAAAAACCACCGGTGGGTTAAAAGGGAAAATCTATGTTGTGACCGACCCATCAGACAACAATGTCGTAAACCCAAAACGTGGAACCCTTCGATTCGCTGCGATTCAAAAGCGTCCGCTTTGGATCATATTTGGGCGCAGCATGATCATCAGGTTGTCCCAGGAGCTCTTGGTGACCAGCCACAAGACCATCGATGCACGCGGTGCCAATGTCCACATTGCTTATGGTGCTGGCATTAGCATTCAATTTGCCAAGAATGTGATCATCCACAACCTTCACATCCACAACGTCATAGCAGCCAGCGGTGGCATGATTCGAGACCACTTCAACCATGTCGGCATGAGAACCGTCAGCGATGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCACCTTTCCATGTCAAACTGTCAGGACGGACTCATCGACGCAATCCAAGGCTCCACCGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTGTTTGGTGCAAGTGATTCATATCAAGGCGACTCGATCATGCAAGTGACGGTTGCATTCAACCATTTCGGAAAGGGATTGGTGCAGAGGATGCCAAGATGCAGATGGGGTTTCTTCCATGTTGTGAACAACGATTACACCCATTGGCTCATGTATGCCATTGGAGGTAGCACACATCCCACCATTATTAGTCAAGGAAATCGTTTCATTGCCCCACCCAACCCTGCGGCGAAACAGATTACAAACAGAAACTATGCAACAGAAGATGTATGGAAAACATGGACATGGAGATCAGAAGGAGATCTAATGATGAATGGAGCCTACTTTGTCCAGTCTGGAAATCCAAGCAAAAAAAGGTCATACAGTAGGCAAGACATGATTAAGGCTAAGCCTGGCACTTTTGTTAGAAGGCTTACACGACTCTCTGGCTCACTCAACTGTTATGTTGGTCGTCCATGCTAA 1314 46.5 MMTGCRIKVVMMLISMVVMLPTLRAGIEFDDFLLQKAEEAKQDSLEAFHPDPMNVTDHLNHHVHLALEVSNNTRRSLRKYNGPCLAANPIDRCWRCDPKWAKNRKKLAKCVLGFGRKTTGGLKGKIYVVTDPSDNNVVNPKRGTLRFAAIQKRPLWIIFGRSMIIRLSQELLVTSHKTIDARGANVHIAYGAGISIQFAKNVIIHNLHIHNVIAASGGMIRDHFNHVGMRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSTHPTIISQGNRFIAPPNPAAKQITNRNYATEDVWKTWTWRSEGDLMMNGAYFVQSGNPSKKRSYSRQDMIKAKPGTFVRRLTRLSGSLNCYVGRPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31182376 31183874 + Hsped.02g18980.1 Hepe02g1898 563399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1898 437 SMART amb_all 162 359 IPR002022 -
Hepe02g1898 437 Pfam Pectate lyase, N terminus 28 77 IPR007524 GO:0030570(InterPro)
Hepe02g1898 437 PANTHER PECTATE LYASE 18-RELATED 20 434 IPR045032 GO:0030570(InterPro)
Hepe02g1898 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Hepe02g1898 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Hepe02g1898 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Hepe02g1898 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Hepe02g1898 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Hepe02g1898 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Hepe02g1898 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Hepe02g1898 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Hepe02g1898 437 Gene3D - 87 430 IPR012334 -
Hepe02g1898 437 Pfam Pectate lyase 173 353 IPR002022 -
Hepe02g1898 437 SUPERFAMILY Pectin lyase-like 88 427 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1898 Hepe-Chr2:31182376 Hepe02g1944 Hepe-Chr2:33368154 2.53e-306 dispersed
Hepe02g1895 Hepe-Chr2:30933475 Hepe02g1898 Hepe-Chr2:31182376 0.0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1898 K01728 - csv:101202789 799.275