Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1912 ATGTTCGATTGTGGTGGATACAAGTCGCAGTACATCGGCGGTCACAAGGAGAAATTCGTGAGATTGGATGATTCGGATTCAAATTTGTCGATGTCCCCTGGAGCAACCAAGATGAAGAAATGCCGATTCAACCTAGAACGCCTCCCTCTCCCATTCATCAAACGATCCAACAACGCTCGAAACTTCCGATTCGATGTCCAAAGCAGCTCCGATGGAATCAAAACGCTAGGACGTTCTCTGCGTGGCGTTTCCAGAGTAATCTTCCCCGAGGATCTCAAAGTGTCGGAGCAGAAGATCTTCGATCCGCAAGACAAATCGCTTCTCTTCTGGAATAAACTCTTCGTTCTCTGCTGTATTCTTGCTGTCTCCATCGATCCGCTCTTCTTCTACCTCCCTGTCTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTAAGCTCGCCGTCACCACCACCACCGTCCGTACCGCCGTTGATGTCTTCTACTTGATTCGGATGGGCTTCCAGTTCCGGACGGCTTACGTTGCTCCCTCCTCCAGGGTGTTTGGCCGCGGCGAGCTTGTCATCGATCCGGCTGACATCGCCAAGCGCTATCTTCAGCGCTATTTCATTGCCGATTTTCTCGCTGTTCTTCCTTTTCCTCAGGTGGTGGTGTGGAGGTTTCTTCACAGGTCAAAAGGTTCAGAAGTGTTGGCTACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCCAGATTCACTAGATTTATACCTTTGAACATAGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTCCTGTACATGCTTGCTAGTCATATAGCAGGAGCCTTCTGGTACTTGCTGGCAGTGGAGAGGAACGATGCATGTTGGAGACAAGCATGCAAAAGCACTGGGAAGTGCAACATAAACTTTTTGTACTGTGGAAATAAGCACATGTCGGGATATAAGGTGTGGAAAAATATAAGCACTCATGTTCTCACAAAGAAATGCACTGCTATTGGAGACAATTTGCCATTCAACTATGGCATTTACACTCAGGCCATTGCCTCTGGCATTGTTCAGTCCAGAAGTTTCATCTCCAAGTTCTGCTATTGCTTGTGGTGGGGCTTGCAAAATTTGAGCACACTGGGTCAGGGGCTGCTCACAAGTACCTATCCTGGGGAGGTTATCTTTTCTATACTTATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTAACAGTCCGACTCGAGGAGATGCGCATCAAGAGGAGAGACTCCGAGCAATGGATGCACCATCGACTCCTTCCACCGGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTTGAAACTAGAGGTGTTGATGAAGAGGGCTTGGTTCAAAGTCTGCCTAAAGATCTTAGGAGAGACATTAAACGACATCTCTGTCTCAATTTGGTTAGAAGGGTCCCTCTGTTCGCAAACATGGATGAGCGTCTTCTAGACGCGATATGCGAGAGGCTAAAGCCAACACTATACACAGAGAACACATACATAGTTCGAGAAGGCGACCCAGTTGACGAAATGCTATTCATAATCCGTGGGCGCCTCGAGAGCGTCACCACCGACGGTGGCCGGAGCGGCTTCTTCAATCGCGGCGTTTTGAAAGAAGGCGACTTCTGCGGCGAGGAGCTTCTGACATGGGCTCTTGACCCCAAGTCCGGTGCCAACCTCCCCTCCTCCACTCGCACGGTCCACGCCTTAACCGAGGTCGAGGCCTTCGCTTTAGAAGCCGAGGAGCTCAAGTTTGTGGCTAGCCAGTTCCGGCGGCTGCACAGCCGCCAGGTACAGCACACTTTCAGATTCTACTCCCAGCAGTGGCGGACATGGGCGTCGTGTTTTATTCAGGCGGCGTGGCGACGATACCTGAAGCGGAAGATAGCGGAGCTGCGGCGAAAGGAGGAGGAGGAGGAGGATGCAGCGGCGGCTGCAGCATATAGCTCGTCGAGGCTTGGGGCGACGATTTTGGCGTCGAGATTTGCGGCGAATGCACTTAGAGGGCATCGAATGAGGAATTTAAGTGGGAAGAGTCTGCTTCACTTGCAGAAGCCCGCGGAGCCTGATTTTTCTGTGTATAAAGGAGACTAA 2193 49.93 MFDCGGYKSQYIGGHKEKFVRLDDSDSNLSMSPGATKMKKCRFNLERLPLPFIKRSNNARNFRFDVQSSSDGIKTLGRSLRGVSRVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSIDPLFFYLPVFNHASYCLGMDTKLAVTTTTVRTAVDVFYLIRMGFQFRTAYVAPSSRVFGRGELVIDPADIAKRYLQRYFIADFLAVLPFPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFTRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACKSTGKCNINFLYCGNKHMSGYKVWKNISTHVLTKKCTAIGDNLPFNYGIYTQAIASGIVQSRSFISKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEEGLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSGANLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEDAAAAAAYSSSRLGATILASRFAANALRGHRMRNLSGKSLLHLQKPAEPDFSVYKGD 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31819252 31824327 + Hsped.02g19120.1 Hepe02g1912 563413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1912 730 FunFam Cyclic nucleotide-gated ion channel 1 505 623 - -
Hepe02g1912 730 Pfam Ion transport protein 109 434 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1912 730 SUPERFAMILY cAMP-binding domain-like 437 627 IPR018490 -
Hepe02g1912 730 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 84 706 - -
Hepe02g1912 730 CDD CAP_ED 507 638 IPR000595 -
Hepe02g1912 730 Gene3D Jelly Rolls 505 625 IPR014710 -
Hepe02g1912 730 ProSiteProfiles cAMP/cGMP binding motif profile. 507 637 IPR000595 -
Hepe02g1912 730 SUPERFAMILY Voltage-gated potassium channels 102 429 - -
Hepe02g1912 730 Pfam Cyclic nucleotide-binding domain 528 618 IPR000595 -
Hepe02g1912 730 Coils Coil 655 678 - -
Hepe02g1912 730 SMART cnmp_10 507 638 IPR000595 -
Hepe02g1912 730 Gene3D - 111 432 - -
Hepe02g1912 730 ProSiteProfiles IQ motif profile. 643 672 - -
Hepe02g1912 730 FunFam Cyclic nucleotide-gated ion channel 1 434 498 - -
Hepe02g1912 730 Gene3D Helix hairpin bin 434 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1912 Hepe-Chr2:31819252 Hepe08g2208 Hepe-Chr8:61746422 0.0 dispersed
Hepe02g1912 Hepe-Chr2:31819252 Hepe06g0783 Hepe-Chr6:54472140 1.65e-265 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1912 K05391 - csv:101221166 1295.03