Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1942 ATGATAACACCTTGTAGAATCAAGGTTGTGATGGTGCTCGTTTCAATGGTTGTTATGTTGCCAACTCTCAGAGCTGGCATTGCTGAATTTGATGACTTTTTGCTGCAAAAGGCTGAAGAAGCTAAACAAGCTTCCCTCGAAGCTTACCACCCTGAACCTATGAATGTCACTGAACATTTCAATCATCAAGTTCATTTAGCTTTAGAGGGAAGCAATGACACTAGGAGGAGCTTGAAGAAATACAGCGGGCCATGCTTGGCAACAAACCCGATTGATCGCTGCTGGCGTTGTGACCCAAATTGGGCCAAGAATCGTAAGAAGCTTGCCGGATGTGTGCTCGGTTTTGGCCGAAAAACCACCGGTGGCTTGAAAGGTGAAATCTACGTCGTGACCGACCCGTCAGATGACGATTTTGTAAACCCTAAACCTGGAACCCTCCGATTCGCTGCAGTTCAACAGGGTCCACTTTGGATCACATTTGGGCGTAGCATGATCATCACACTGTCTAAGGAGCTCTTGGTGACCAGTGACAAGACCATCGATGCACGCGGTGCCAATGTCCACATTGCCAATGGTGCTGGTCTTAGCATTCAATTCGCTCAGAATGTGATCATCCATGGCCTTCACATCCACCACATCATAGCTGCCACCGGTGGCATGATTCGAGACAACTTCAACCATGTCGGCATTAGAACCGTGAGCGATGGAGACGGCATCTCCATCTTTGGATCGTCCAATATCTGGCTCGATCACCTCTCCATGTCCAACTGCCAGGACGGACTCATTGACGCAATCCAAGGCTCCACTGGAATCACCATCTCAAACTCTCATTTCACTCATCACAATGACGTGATGTTGTTCGGTGCGAGTGAATCGTATCAAGGCGACACGGTCATGCAAGTGACTGTCGCGTTCAACCATTTCGGAAAGGGATTGGTGCAGAGAATGCCAAGATGTAGATTTGGTTTCTTCCATGTTGTGAACAACGATTACACCCATTGGCTCATGTACGCCATTGGAGGCAGCCAACATCCCACTATTATCAGCCAAGGAAATCGTTTCATTGCCCCAAATAACCCTGCAGCAAGTCAGATTACAAATAGAAACTATGCAACAGAGGCTGTATGGAAGACATGGACATGGAGATCAGAAGGGGATTTGATGATGAATGGAGCCTACTTCGTTCAGTCTGGAAATCCAAGCCAAAGATTGGCAGTCGACGGAGATTCGTTGATAAAGGCTAAGCCTGGCACTTTTGTTACAAGGCTTACACGATTCTCTGGCGCACTCAGTTGTTATGTTGGCCGCCCATGCTAA 1317 47.68 MITPCRIKVVMVLVSMVVMLPTLRAGIAEFDDFLLQKAEEAKQASLEAYHPEPMNVTEHFNHQVHLALEGSNDTRRSLKKYSGPCLATNPIDRCWRCDPNWAKNRKKLAGCVLGFGRKTTGGLKGEIYVVTDPSDDDFVNPKPGTLRFAAVQQGPLWITFGRSMIITLSKELLVTSDKTIDARGANVHIANGAGLSIQFAQNVIIHGLHIHHIIAATGGMIRDNFNHVGIRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTGITISNSHFTHHNDVMLFGASESYQGDTVMQVTVAFNHFGKGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPNNPAASQITNRNYATEAVWKTWTWRSEGDLMMNGAYFVQSGNPSQRLAVDGDSLIKAKPGTFVTRLTRFSGALSCYVGRPC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33299107 33300597 + Hsped.02g19420.1 Hepe02g1942 563443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1942 438 Gene3D - 88 431 IPR012334 -
Hepe02g1942 438 PANTHER PECTATE LYASE 18-RELATED 16 435 IPR045032 GO:0030570(InterPro)
Hepe02g1942 438 Pfam Pectate lyase 173 354 IPR002022 -
Hepe02g1942 438 SUPERFAMILY Pectin lyase-like 89 429 IPR011050 -
Hepe02g1942 438 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Hepe02g1942 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Hepe02g1942 438 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Hepe02g1942 438 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Hepe02g1942 438 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Hepe02g1942 438 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Hepe02g1942 438 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Hepe02g1942 438 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Hepe02g1942 438 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570(InterPro)
Hepe02g1942 438 SMART amb_all 163 360 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1942 Hepe-Chr2:33299107 Hepe08g1574 Hepe-Chr8:22341687 2.35e-220 dispersed
Hepe02g1942 Hepe-Chr2:33299107 Hepe02g1944 Hepe-Chr2:33368154 1.19e-286 proximal
Hepe02g1895 Hepe-Chr2:30933475 Hepe02g1942 Hepe-Chr2:33299107 4.01e-287 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1942 K01728 - csv:101202789 753.436