Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1944 ATGATGACAGGTTGTAGAATCAAGGTTGTGATGGTGCTGGTTTCAATGGTTGTGATGTTGCCAACTCTCATAGCTCACATTGTTGAATTTGATGACTTTTTGCTGCAAAAGGAGAAAGAAGCCAAACAAGCTTCCCTCGAAGCCTTCAACCCTGACCCCATGAATGTCACTGACCATTTCAACCATCATGTTCATTTAGCATTGGAGGGAAGTAATAACACTAGGAGGAGCCTAAGGAAATACAACGGGCCATGCTTGGCCACAAACCCGATCGACCGTTGTTGGCGTTGTGACAAAAAATGGGCCAAGAACCGTAAGAAGCTTGCCAAATGTGTGCTAGGCTTTGGCCGAAAAACCACTGGTGGCTTAAAAGGGAAAATCTACGTGGTGACCGATGCCTCAGACAACGATGTTGTAAACCCAAAACGTGGAACCCTTCGATTCGGCGCGATTCAAAAGCGTCCGCTTTGGATTATATTTGGGCGCAGTATGATCATTAGGTTGTCCAAGGAGCTATTGGTGACTAGCCACAAGACCATCGATGCACGTGGTGCCAATGTCCACATTGCCTATGGTGCTGGTCTTAGCATTCACTTTTCCAAGAATGTGATCATCCACGGCCTTCACATCCACAACATCATAGCGACCAGCGGTGGCATGATTCGAGACCACTTCAACCATGTTGGCCTTAGAACCGTCAGCGATGGAGACGGTATCTCTATCTTTGGATCATCCAACATCTGGCTTGATCACCTCTCCATGTCCTACTGCCAGGACGGACTCATTGACGCAATCCAAGGCTCCACTGCAATCACTGTCTCAAACTCTCATTTTACTCATCACAATGACGTGATGTTGTTTGGTGCAAGTGATTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCGTTCAACCATTTCGGAAAAGGATTGGTGCAGAGAATGCCAAGATGTAGATTTGGTTTCTTCCATGTTGTAAACAACGATTATACCCACTGGCTCATGTATGCCATTGGAGGTAGCCAACATCCCACCATTATCAGTCAAGGAAATCGTTTCATTGCCCCACCTAACCATGCGGCAAAACAGATTACAAATAGAAACTATGCAACAGAGGCTGTATGGAAAACATGGACATGGAGATCAGAAGGGGATCTGATGATGAATGGAGCCTACTTTATTCAGTCCGGAAATCCAAGCAAAAAAAGGTCGTACAACAGGCACGACATGATAAAGGCTAAGCCAGGCACTTTTGTTAGAAGGCTTACACGATTCTCTGGGTCACTTAATTGTTATATTGGTCGCCCGTGCTAA 1317 46.01 MMTGCRIKVVMVLVSMVVMLPTLIAHIVEFDDFLLQKEKEAKQASLEAFNPDPMNVTDHFNHHVHLALEGSNNTRRSLRKYNGPCLATNPIDRCWRCDKKWAKNRKKLAKCVLGFGRKTTGGLKGKIYVVTDASDNDVVNPKRGTLRFGAIQKRPLWIIFGRSMIIRLSKELLVTSHKTIDARGANVHIAYGAGLSIHFSKNVIIHGLHIHNIIATSGGMIRDHFNHVGLRTVSDGDGISIFGSSNIWLDHLSMSYCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNHAAKQITNRNYATEAVWKTWTWRSEGDLMMNGAYFIQSGNPSKKRSYNRHDMIKAKPGTFVRRLTRFSGSLNCYIGRPC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33368154 33369648 - Hsped.02g19440.1 Hepe02g1944 563445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1944 438 SMART amb_all 163 360 IPR002022 -
Hepe02g1944 438 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Hepe02g1944 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Hepe02g1944 438 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Hepe02g1944 438 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Hepe02g1944 438 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Hepe02g1944 438 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Hepe02g1944 438 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Hepe02g1944 438 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Hepe02g1944 438 Pfam Pectate lyase, N terminus 26 78 IPR007524 GO:0030570(InterPro)
Hepe02g1944 438 Pfam Pectate lyase 174 354 IPR002022 -
Hepe02g1944 438 Gene3D - 88 431 IPR012334 -
Hepe02g1944 438 PANTHER PECTATE LYASE 18-RELATED 20 433 IPR045032 GO:0030570(InterPro)
Hepe02g1944 438 SUPERFAMILY Pectin lyase-like 89 428 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1895 Hepe-Chr2:30933475 Hepe02g1944 Hepe-Chr2:33368154 2.53e-306 dispersed
Hepe02g1898 Hepe-Chr2:31182376 Hepe02g1944 Hepe-Chr2:33368154 2.53e-306 dispersed
Hepe02g1944 Hepe-Chr2:33368154 Hepe08g1574 Hepe-Chr8:22341687 2.14e-223 dispersed
Hepe02g1942 Hepe-Chr2:33299107 Hepe02g1944 Hepe-Chr2:33368154 1.19e-286 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1944 K01728 - csv:101202789 798.505