Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1946 ATGGAGGCGCCAGCTTTGGTACTGAAGAACGAGGAGAATTTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCGTTAGACGTGTCAAGAGACGGCGGAGAGAGCCCGCCGCCGCCGCCACAGCCTCTGATCAAACTAATAAGAAGCAGTGTCTGCCGCAACAATCCGATCAAGCTCCAACCACCACTACGAAGCGGAGTTCAAGATTTCGCGGCGTAAGCAGCAGACATAGATGGACGGGTCGGTTCGAAGCGCATTTATGGGATAAGCTTTCTTGGAACATGACACAAAAGAAGAAGGGCAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACCATCACTAATTTTCCAATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAGCAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAAAGCAGTGGTTTCTCAAGAGGTGTTTCAAAATATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGAAGAGTTTATGGGAACAAGTACCTCTATCTTGGAACTTACAGCACTCAAGAGGAAGCTGCTCGAGCTTATGATATGGCTGCCATAGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAACAATTACATGGCGTGGCTGAAGCCTCCTCCACCGCCGCCCGCCGGCCCCAACGACGCCCATATGGCGTCGGACCCCCACAAAGAACTCTGCAACTCCAGCTCCATCCCAGCAGAAGAAACTTCCCTCTTCAAAAACCATCACTACGACATCCCGTTCCCTTCCCTTCAAAAGAAAGAGCTTCTTGAAAGCTGCAGCACCCCTCTAAACAGTTACGCTAAATCTTCTTCTCCATCAGCTCTCGACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTGGTTGAGACAAACTCCAATCTCTCTGTGGATGAGGCTGATAATGGAGAAGAAGCAAAGACTCGAGCGCAGCTCGACAGTGTATTTGATGAGTTTGGAGACGTCTTCTGTGATAGACTTACAGATGTACCATTTGTTTGCAGCTCCAACAAAGAGCTGCAAGAAAGCGAGCTTCATTCCTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA 1179 47.07 MEAPALVLKNEENLRICWTEGQTQAVRRVKRRRREPAAAATASDQTNKKQCLPQQSDQAPTTTTKRSSRFRGVSSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQAMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWNNYMAWLKPPPPPPAGPNDAHMASDPHKELCNSSSIPAEETSLFKNHHYDIPFPSLQKKELLESCSTPLNSYAKSSSPSALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRAQLDSVFDEFGDVFCDRLTDVPFVCSSNKELQESELHSYFNGTFHRFKAA 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33659694 33663804 + Hsped.02g19460.1 Hepe02g1946 563447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1946 392 CDD AP2 68 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1946 392 Pfam AP2 domain 168 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1946 392 SUPERFAMILY DNA-binding domain 168 229 IPR016177 GO:0003677(InterPro)
Hepe02g1946 392 MobiDBLite consensus disorder prediction 40 69 - -
Hepe02g1946 392 ProSiteProfiles AP2/ERF domain profile. 169 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1946 392 Gene3D AP2/ERF domain 68 135 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1946 392 Gene3D AP2/ERF domain 168 228 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1946 392 MobiDBLite consensus disorder prediction 27 74 - -
Hepe02g1946 392 ProSiteProfiles AP2/ERF domain profile. 69 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1946 392 SUPERFAMILY DNA-binding domain 68 135 IPR016177 GO:0003677(InterPro)
Hepe02g1946 392 SMART rav1_2 169 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1946 392 SMART rav1_2 69 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1946 392 CDD AP2 168 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1946 392 FunFam AP2-like ethylene-responsive transcription factor 168 229 - -
Hepe02g1946 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 54 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1946 Hepe-Chr2:33659694 Hepe08g1600 Hepe-Chr8:23033301 3.66e-104 dispersed
Hepe02g1946 Hepe-Chr2:33659694 Hepe05g0800 Hepe-Chr5:19156197 9.59e-54 wgd
Hepe02g1946 Hepe-Chr2:33659694 Hepe06g0015 Hepe-Chr6:466507 3.57e-06 wgd
Hepe02g1946 Hepe-Chr2:33659694 Hepe07g1219 Hepe-Chr7:30453231 9.39e-07 wgd
Hepe02g1946 Hepe-Chr2:33659694 Hepe08g1924 Hepe-Chr8:51016520 1.79e-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55067 PF00847 AP2 1.00E-07 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1946 - - - 0.0