Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1975 ATGGACTTGACTCCTGCCATTTCCACCGCTGGGGGAGCTGTGAAATCCCCTGAATTAGACGCTGAAACACCCATCAAAATCCAACCCTCCACCAAATCTCTGCCGTTCACCAACGGCGTCCTCAAGCGCCACCACCACACGGCTCCCCCACTGCCACCGGTGGTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGCCATGCCTTAGACGGCTGCGGCGAGTTTATGCCCTCCCCCACCGCCACTGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAGGACTCAATCGCCACTCCGACGACAACCCATGTCATTGAGTACCAACCCCACCACCGTCACCACCCGCCGCCGCCGATTGCGGCGGCTGTGTCCCACCGGAGCCCGAGCTCCGCCTCCCCTCCACCGATCTCCTCCTCATACTACCCTTCAGCCCCCCACATGCTTCTCGCCCTCTCTGGCGGCCTGCCAGAAAACGCCGGCAGCGGATTCCACCACTCGATTCTGACGCCGAGCCCCAATTCGAGAAAGCGATTCAGGACGAAATTCACTCAAAATCAGAAGGAAAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGATGAGGATATGATCCGAGAATTCTGCAGCGACGTCGGAGTGGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACGCTCGGGAAAAAAGACGGCTGCCAGAACATGAATGGCGGTAGCGGCAGCGGCGACGGCGATGGAGACGGCGATGAGAAAATTAACGGCAGCAGCGAGCCACATGCCGCGGCAAATGGGTCGTCTTCTTCCTCTTGA 882 57.94 MDLTPAISTAGGAVKSPELDAETPIKIQPSTKSLPFTNGVLKRHHHTAPPLPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATATDPTSLKCAACGCHRNFHRREPEDSIATPTTTHVIEYQPHHRHHPPPPIAAAVSHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIREFCSDVGVDRGVLKVWMHNNKNTLGKKDGCQNMNGGSGSGDGDGDGDEKINGSSEPHAAANGSSSSS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35951639 35952890 - Hsped.02g19750.1 Hepe02g1975 563476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1975 293 MobiDBLite consensus disorder prediction 124 154 - -
Hepe02g1975 293 MobiDBLite consensus disorder prediction 1 37 - -
Hepe02g1975 293 SUPERFAMILY Homeodomain-like 184 252 IPR009057 -
Hepe02g1975 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 249 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe02g1975 293 NCBIfam homeobox domain, ZF-HD class 191 248 IPR006455 -
Hepe02g1975 293 MobiDBLite consensus disorder prediction 249 293 - -
Hepe02g1975 293 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
Hepe02g1975 293 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Hepe02g1975 293 MobiDBLite consensus disorder prediction 250 264 - -
Hepe02g1975 293 FunFam Zinc-finger homeodomain protein 2 179 252 - -
Hepe02g1975 293 Gene3D - 183 252 - -
Hepe02g1975 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1975 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1975 Hepe-Chr2:35951639 Hepe02g3167 Hepe-Chr2:81170491 5.28e-106 dispersed
Hepe02g1975 Hepe-Chr2:35951639 Hepe02g2004 Hepe-Chr2:42036196 7.10e-183 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55069 PF04770 ZF-HD_dimer 1.70E-29 No_clan Hepe TF