Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1979 ATGGCCACAGGAAACCCGAAATCAGGCGGCAATGAAGAAGCCTTCATCTTCTTGGGAAGCGAATACTCCTCCGATCCTCAACAAACCTTCTTCCAAGACCGATTTCACCAATTTTACCCTCCAGAGTTCTCAAGAAAGCTTGTGGCGGAGCTGATTGCCACGTATTTGCTTGTGTTTGTCACGTGTGGGGCGGCGGCATTGAGTCTCACTGATGACCGCCAAGTGTCCAAGCTTGCCGCCTCGATTTCCGGCGGCCTCATTGTCACCGTCATGATCTACGCCGTCGGACATATCTCCGGAGCCCATATGAATCCGGCTGTTACTTTCGCTTTTGCTTCTGTTCGCCGATTTCCCTGGAAACAGGTTCCGTTATATGCGGCAGCTCAACTAAGTGGAGCTACATCAGCGGCTTTTACACTGCGCATATTATTGGATCCAATTACAGAACTAGGTACTACTTCACCTTCAGGACCAGAGCTAAAAGCACTTCTCATGGAGATTGTTGTCTCATTCTGTATGATGTTCGTCACTTCTGCGGTAGCAACCGACACGAAAGCTATAGGAGAGCTTGCAGGTATAGCAGTGGGCTCAGCTGTATGCATCACATCCATCTTTGCTGGGCCTATATCGGGTGGGTCGATGAACCCTGCGAGGTCAATAGGACCTGCGATTGCAAGTTCACATTATGAAGGAATTTGGGTGTACGTGGTCGGGCCAGTTGCAGGGACGTTGTTGGGGGCATGGTCGTATAATTTCATACGAGCGACTGAAAAACATGGGCATCCCCTTTCTCTACATTGA 801 49.81 MATGNPKSGGNEEAFIFLGSEYSSDPQQTFFQDRFHQFYPPEFSRKLVAELIATYLLVFVTCGAAALSLTDDRQVSKLAASISGGLIVTVMIYAVGHISGAHMNPAVTFAFASVRRFPWKQVPLYAAAQLSGATSAAFTLRILLDPITELGTTSPSGPELKALLMEIVVSFCMMFVTSAVATDTKAIGELAGIAVGSAVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYVVGPVAGTLLGAWSYNFIRATEKHGHPLSLH 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37893988 37904394 + Hsped.02g19790.1 Hepe02g1979 563480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1979 266 Gene3D Glycerol uptake facilitator protein. 20 261 IPR023271 -
Hepe02g1979 266 SUPERFAMILY Aquaporin-like 36 258 IPR023271 -
Hepe02g1979 266 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Hepe02g1979 266 CDD MIP 45 253 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1979 266 Pfam Major intrinsic protein 41 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1979 266 PANTHER AQUAPORIN NIP2-1 39 257 IPR034294 -
Hepe02g1979 266 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1979 266 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1979 266 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1979 266 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1979 266 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1979 266 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1979 Hepe-Chr2:37893988 Hepe02g2012 Hepe-Chr2:43786493 6.84e-188 dispersed
Hepe02g1979 Hepe-Chr2:37893988 Hepe02g1980 Hepe-Chr2:38056723 2.99e-125 tandem
Hepe05g1525 Hepe-Chr5:64791795 Hepe02g1979 Hepe-Chr2:37893988 9.14e-38 transposed
Hepe02g1979 Hepe-Chr2:37893988 Hepe06g0439 Hepe-Chr6:23712439 4.57e-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1979 K09874 - csv:101205456 409.453