Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2004 ATGGACTTGACTCCTGCCATTTCCACCGCTGGGGGAGCTGTGAAATCCCCTGAATTAGACGCTGAAACACCCATCAAAATCCAACCCTCCACCAAATCTCTGCCGTTCACCAACGGCGTCCTCAAGCGCCACCACCACACGGCTCCCCCACTGCCACCGGTGGTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGCCATGCCTTAGACGGCTGCGGCGAGTTTATGCCCTCCCCCACCGCCACTGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAGGACTCAATCGCCACTCCGACGACAACCCATGTCATTGAGTACCAACCCCACCACCGTCACCACCCGCCGCCGCCGATTGCGGCGGCTGTGTCCCACCGGAGCCCGAGCTCCGCCTCCCCTCCACCGATCTCCTCCTCATACTACCCTTCAGCCCCCCACATGCTTCTCGCCCTCTCTGGCGGCCTGCCAGAAAACGCCGGCAGCGGATTCCACCACTCGATTCTGACGCCGAGCCCCAATTCGAGAAAGCGATTCAGGACGAAATTCACTCAAAATCAGAAGGAAAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGATGAGGATATGATCCGAGAATTCTGCAGCGACGTCGGAGTGGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACGCTCGGGAAAAAAGACGGCTGCCAGAACATGAATGGCGGCAGCGGCAGCGGCGACGGCGATGGAGACGGCGATGAGAAAATTAACGGCAGCAGCGAGCCACATGCCGCGGCAAATGGGTCGTCTTCTTCCTCTTGA 882 58.05 MDLTPAISTAGGAVKSPELDAETPIKIQPSTKSLPFTNGVLKRHHHTAPPLPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATATDPTSLKCAACGCHRNFHRREPEDSIATPTTTHVIEYQPHHRHHPPPPIAAAVSHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIREFCSDVGVDRGVLKVWMHNNKNTLGKKDGCQNMNGGSGSGDGDGDGDEKINGSSEPHAAANGSSSSS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42036196 42037447 - Hsped.02g20040.1 Hepe02g2004 563505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2004 293 MobiDBLite consensus disorder prediction 124 154 - -
Hepe02g2004 293 MobiDBLite consensus disorder prediction 1 37 - -
Hepe02g2004 293 SUPERFAMILY Homeodomain-like 184 252 IPR009057 -
Hepe02g2004 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 249 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe02g2004 293 NCBIfam homeobox domain, ZF-HD class 191 248 IPR006455 -
Hepe02g2004 293 MobiDBLite consensus disorder prediction 249 293 - -
Hepe02g2004 293 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
Hepe02g2004 293 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Hepe02g2004 293 MobiDBLite consensus disorder prediction 250 264 - -
Hepe02g2004 293 FunFam Zinc-finger homeodomain protein 2 179 252 - -
Hepe02g2004 293 Gene3D - 183 252 - -
Hepe02g2004 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2004 Hepe-Chr2:42036196 Hepe02g3167 Hepe-Chr2:81170491 5.28e-106 dispersed
Hepe02g1975 Hepe-Chr2:35951639 Hepe02g2004 Hepe-Chr2:42036196 7.10e-183 transposed
Hepe02g2004 Hepe-Chr2:42036196 Hepe07g1387 Hepe-Chr7:45655355 2.58e-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55071 PF04770 ZF-HD_dimer 1.70E-29 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2004 - - - 0.0