Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g2004 | ATGGACTTGACTCCTGCCATTTCCACCGCTGGGGGAGCTGTGAAATCCCCTGAATTAGACGCTGAAACACCCATCAAAATCCAACCCTCCACCAAATCTCTGCCGTTCACCAACGGCGTCCTCAAGCGCCACCACCACACGGCTCCCCCACTGCCACCGGTGGTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGCCATGCCTTAGACGGCTGCGGCGAGTTTATGCCCTCCCCCACCGCCACTGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAGGACTCAATCGCCACTCCGACGACAACCCATGTCATTGAGTACCAACCCCACCACCGTCACCACCCGCCGCCGCCGATTGCGGCGGCTGTGTCCCACCGGAGCCCGAGCTCCGCCTCCCCTCCACCGATCTCCTCCTCATACTACCCTTCAGCCCCCCACATGCTTCTCGCCCTCTCTGGCGGCCTGCCAGAAAACGCCGGCAGCGGATTCCACCACTCGATTCTGACGCCGAGCCCCAATTCGAGAAAGCGATTCAGGACGAAATTCACTCAAAATCAGAAGGAAAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGATGAGGATATGATCCGAGAATTCTGCAGCGACGTCGGAGTGGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACGCTCGGGAAAAAAGACGGCTGCCAGAACATGAATGGCGGCAGCGGCAGCGGCGACGGCGATGGAGACGGCGATGAGAAAATTAACGGCAGCAGCGAGCCACATGCCGCGGCAAATGGGTCGTCTTCTTCCTCTTGA | 882 | 58.05 | MDLTPAISTAGGAVKSPELDAETPIKIQPSTKSLPFTNGVLKRHHHTAPPLPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATATDPTSLKCAACGCHRNFHRREPEDSIATPTTTHVIEYQPHHRHHPPPPIAAAVSHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIREFCSDVGVDRGVLKVWMHNNKNTLGKKDGCQNMNGGSGSGDGDGDGDEKINGSSEPHAAANGSSSSS | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 42036196 | 42037447 | - | Hsped.02g20040.1 | Hepe02g2004 | 563505 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g2004 | 293 | MobiDBLite | consensus disorder prediction | 124 | 154 | - | - | |
Hepe02g2004 | 293 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Hepe02g2004 | 293 | SUPERFAMILY | Homeodomain-like | 184 | 252 | IPR009057 | - | |
Hepe02g2004 | 293 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 45 | 249 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Hepe02g2004 | 293 | NCBIfam | homeobox domain, ZF-HD class | 191 | 248 | IPR006455 | - | |
Hepe02g2004 | 293 | MobiDBLite | consensus disorder prediction | 249 | 293 | - | - | |
Hepe02g2004 | 293 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 56 | 107 | IPR006456 | - | |
Hepe02g2004 | 293 | Pfam | ZF-HD protein dimerisation region | 54 | 108 | IPR006456 | - | |
Hepe02g2004 | 293 | MobiDBLite | consensus disorder prediction | 250 | 264 | - | - | |
Hepe02g2004 | 293 | FunFam | Zinc-finger homeodomain protein 2 | 179 | 252 | - | - | |
Hepe02g2004 | 293 | Gene3D | - | 183 | 252 | - | - | |
Hepe02g2004 | 293 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 56 | 107 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2004 | Hepe-Chr2:42036196 | Hepe02g3167 | Hepe-Chr2:81170491 | 5.28e-106 | dispersed | |
Hepe02g1975 | Hepe-Chr2:35951639 | Hepe02g2004 | Hepe-Chr2:42036196 | 7.10e-183 | transposed | |
Hepe02g2004 | Hepe-Chr2:42036196 | Hepe07g1387 | Hepe-Chr7:45655355 | 2.58e-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55071 | PF04770 | ZF-HD_dimer | 1.70E-29 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g2004 | - | - | - | 0.0 |