Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2012 ATGGCCACAGGAAACCCGAAATCAGGCGGCAATGAAGAAGCCTTCATCTTCTTGGGAAGCGAATACTCCTCCGATCCTCAACAAACCTTCTTCCAAGACCGATTTCACCAATTTTACCCTCCAGAGTTCTCAAGAAAGCTTGTGGCGGAGCTGATTGCCACGTATTTGCTTGTGTTTGTCACGTGTGGGGCGGCGGCATTGAGTCTCACTGATGACCGCCAAGTGTCCAAGCTTGCCGCCTCGATTTCCGGCGGCCTCATTGTCACCGTCATGATCTACGCCGTCGGACATATCTCCGGAGCCCATATGAATCCGGCTGTTACTTTCGCTTTTGCTTCTGTTCGCCGATTTCCCTGGAAACAGGTTCCGTTATATGCGGCAGCTCAACTAAGTGGAGCTACATCAGCGGCTTTTACACTGCGCATATTATTGGACCCAATTACAGAACTAGGTACTACTTCACCTTCAGGACCAGAGCTAAAAGCACTTCTCATGGAGATTGTTGTCTCATTCTGTATGATGTTCGTCACTTCTGCGGTAGCAACCGACACGAAAGCTATAGGAGAGCTTGCAGGTATAGCAGTGGGCTCAGCTGTATGCATCACATCCATCTTTGCTGGGCCTATATCGGGTGGGTCGATGAACCCTGCGAGGTCAATAGGACCTGCGATTGCAAGTTCACATTATGAAGGAATTTGGGTGTACGTGGTCGGGCCAGTTGCAGGGACGTTGTTGGGGGCATGGTCGTATAATTTCATACGAGCGACTGAAAAACGTGGACATCCCCTTTCACTACATTGA 801 49.94 MATGNPKSGGNEEAFIFLGSEYSSDPQQTFFQDRFHQFYPPEFSRKLVAELIATYLLVFVTCGAAALSLTDDRQVSKLAASISGGLIVTVMIYAVGHISGAHMNPAVTFAFASVRRFPWKQVPLYAAAQLSGATSAAFTLRILLDPITELGTTSPSGPELKALLMEIVVSFCMMFVTSAVATDTKAIGELAGIAVGSAVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYVVGPVAGTLLGAWSYNFIRATEKRGHPLSLH 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43786493 43804500 + Hsped.02g20120.1 Hepe02g2012 563513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2012 266 PANTHER AQUAPORIN NIP2-1 39 257 IPR034294 -
Hepe02g2012 266 Gene3D Glycerol uptake facilitator protein. 20 261 IPR023271 -
Hepe02g2012 266 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Hepe02g2012 266 SUPERFAMILY Aquaporin-like 36 258 IPR023271 -
Hepe02g2012 266 CDD MIP 45 253 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2012 266 Pfam Major intrinsic protein 41 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2012 266 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2012 266 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2012 266 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2012 266 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2012 266 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g2012 266 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1979 Hepe-Chr2:37893988 Hepe02g2012 Hepe-Chr2:43786493 6.84e-188 dispersed
Hepe02g2012 Hepe-Chr2:43786493 HepeContig70g0005 Hepe-ChrContig70:822542 3.02e-79 dispersed
Hepe02g2012 Hepe-Chr2:43786493 Hepe02g2014 Hepe-Chr2:44304420 8.55e-125 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2012 K09874 - csv:101205456 406.371