Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2055 ATGGATAGGGTGGATAGAAGAAATGAAGATAGAAACATTGAGGTTTTTCTCAAAAATTACAAGCTTGAAAGAATTGTTGGAATTGGTTCAACTGGAAAAGTTAAAGTTGCAAAACATAAATTAACTGGACATCAAGTTGCCATAAAGATCCTCAACCGTCACAACATTGCAAACATGGGTTTCCAAGAAAAAGTTAAAAGAGAAATCAAAATAATGAAGTTGTTTATACATCCTCACATAGTACAACTATATGAAGTTATAGAAACACCAACTGATACCTATGTCGTGATGGAATATGTGAAGTCGGGAGAACTGTTTGATTATATTGTGGAGAAAGGTAGGTTAAAGGAAGATGAAGCTCGAAGACTTTTCCAGCAGATAATATCTGGAGTGGAGCATTGCCACAGAAATATGATAGTTCACAGAGATCTGAAGGCTGAGAATTTGCTTTTGGACTCCAATTTCAATGTAAAGATAGCTGATTTCGGTTTTAGCAATATCATGTATGATGGACATTTCCTCCAAACAAGTTGTGGGAGTTGTAACTATGCTGCTCCAGAGGTTATTTGTGGTAAATTGTATGCTGGGCCCGAAATAGACATATGGAGTTGTGGAGTTATATTATATGCTCTTCTATGTGGTTTTCTACCTTTTGATGATGAAAACATTCTCATTCTTCATCAAAAAATAAAGAATGGAGTGTATAGGATTCCAAGTTACTTATCACCTGCGGCAAAAAACTTGATCTCAAGGATGCTTGCACTTGATTCACTTACACGAATTACCATACCTCAAATTCGAAAGCATCCATGGTTTCAACCTCATCTTCCTCGTTATTTAGCTGTCAAACCAATTTCTATTATCCAACAACTTGAAAAGATTGATAAGGATGTTCTCCAGAGACTGGTTGTGATGGGCTTTAACAAAAATAAATTGGTTGAATCTCTTCAGAACAAACGTCAAAATGAGGCAACTGTCACGTACTATTTGTTGTTGGGGGATCGGTTCCCTATTTTCGGTGGTTATCTCGGCGCTGAATTTCAGGAATCCATGGAAGCTAACTACATGGGTCAAATTGTTACCACGTCGCCTTCTTTTCAACATATGGATAATCAAGTTGTAGGCGTCACACCTGGGATTCCTGTTAATGGGAAGTGGACTCTTGGATTACAGGGTAAAGCAAATCCAAGAGATATAATGATGAAAGTGCTTAAAGTGCTACAAGAACTAAATGTGTGTTGGAAGATGATTGGTGATTACAACATGAAATGTAAGCTGACATCTAATATTGTCAAGTTCGAAGTTCAGCTTTATAAAATGCAAGAGGAAAAGTATCTAATTGATATGCAAAGGATCCAAGGTCCTCAGATTCTATTCTTGAACCTTTGTGCCACCTTCATTTCCAGGCTTCGAGTAGTTTAA 1422 36.99 MDRVDRRNEDRNIEVFLKNYKLERIVGIGSTGKVKVAKHKLTGHQVAIKILNRHNIANMGFQEKVKREIKIMKLFIHPHIVQLYEVIETPTDTYVVMEYVKSGELFDYIVEKGRLKEDEARRLFQQIISGVEHCHRNMIVHRDLKAENLLLDSNFNVKIADFGFSNIMYDGHFLQTSCGSCNYAAPEVICGKLYAGPEIDIWSCGVILYALLCGFLPFDDENILILHQKIKNGVYRIPSYLSPAAKNLISRMLALDSLTRITIPQIRKHPWFQPHLPRYLAVKPISIIQQLEKIDKDVLQRLVVMGFNKNKLVESLQNKRQNEATVTYYLLLGDRFPIFGGYLGAEFQESMEANYMGQIVTTSPSFQHMDNQVVGVTPGIPVNGKWTLGLQGKANPRDIMMKVLKVLQELNVCWKMIGDYNMKCKLTSNIVKFEVQLYKMQEEKYLIDMQRIQGPQILFLNLCATFISRLRVV 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49273026 49291450 + Hsped.02g20550.1 Hepe02g2055 563556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2055 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g2055 473 FunFam CAMK family protein kinase 13 336 - -
Hepe02g2055 473 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2055 473 Pfam Kinase associated domain 1 430 472 IPR001772 -
Hepe02g2055 473 CDD AMPKA_C 385 470 - -
Hepe02g2055 473 SMART uba_6 295 332 IPR015940 -
Hepe02g2055 473 FunFam Non-specific serine/threonine protein kinase 5 101 - -
Hepe02g2055 473 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 16 284 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Hepe02g2055 473 Gene3D Transferase(Phosphotransferase) domain 1 10 338 - -
Hepe02g2055 473 Gene3D Kinase associated domain 1, KA1 389 471 - -
Hepe02g2055 473 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2055 473 CDD UBA_SnRK1_plant 294 332 - -
Hepe02g2055 473 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524(InterPro)
Hepe02g2055 473 SUPERFAMILY KA1-like 329 472 IPR028375 -
Hepe02g2055 473 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Hepe02g2055 473 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 424 472 IPR001772 -
Hepe02g2055 473 SMART serkin_6 20 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2055 473 SUPERFAMILY Protein kinase-like (PK-like) 16 291 IPR011009 -
Hepe02g2055 473 CDD STKc_AMPK_alpha 17 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2055 Hepe-Chr2:49273026 Hepe08g0038 Hepe-Chr8:288362 1.76e-78 dispersed
Hepe03g0445 Hepe-Chr3:6716682 Hepe02g2055 Hepe-Chr2:49273026 1.39e-220 transposed
Hepe01g0154 Hepe-Chr1:26638225 Hepe02g2055 Hepe-Chr2:49273026 6.47e-19 wgd
Hepe02g2055 Hepe-Chr2:49273026 Hepe04g0381 Hepe-Chr4:52457355 1.15e-40 wgd
Hepe02g2055 Hepe-Chr2:49273026 Hepe05g1151 Hepe-Chr5:56736226 2.65e-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72580 PF00069 Pkinase 5.40E-74 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2055 K07198 - csv:101214585 726.857