Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2102 ATGCAAATGTGCAGCGTCCCAATTCGAAACCCCTCCTGGTTCTCCACTCGAAAGCTGTTCGAGCAGAAGCTTTCAGATCTCCACAAATGCACAGATCTCAACCAAGTTAAGCAACTCCACGCCCAAATCCTGAAATCCGATCTCCACCTCGACCTCTATGTTGTTCCCAAGCTCATCTCCGCCTTCTCCCTCTGCCGCCAAATGCCCCTCGCCACCAACGCCTTCAATCAAATTCAAAATCCCAACGTCCATTTGTACAACACTCTGATTCGAGCCCACGCCCACAACTCCCAGCCCTCCCAGGCCTTCGCCACTTTCTTCGCTATGCAATCCCATCAATTCTACCCCGACAATTTCACTTTCCCATTTCTCCTCAAAGCCTGTTCTGGCCAACTGTGGTTCCCAGTTATTGAAATGGCACACGCCCAAATCGAGAAATTCGGGTTCATGTCGGATGTATTCGTGCCTAATTCTCTAATTGATTCTTATTCCAAATGTGGGTCTCGTGGAATTGCGGCTGCCAACAAGTTTTTTGTGTCCATGGGGAATTGCCGGGATGTTGTGTCGTGGAATTCGATGATCTCTGGATTTGCGAAGGGTGGGTTGTACGAAGAAGCTCGGAAGCTGTTCGATGAAATGCCTGAAAGGGATGCTATTAGTTGGAACACGATGTTGGATGGGTATGTCAAAGCAGGGCAAATGGATGATGCATTTAAACTGTTTGATGAAATGCCTCAGAGAAATGTTGTGTCTTGGTCGACGATGGTGTTGGGGTATTGTAAGGTGGGGGATATGGAGATGGCACGGATGCTGTTTGATAATATGCCTGTGAAGAATATGGTTTCTTGGACTATAATTATCTCTGGTTTTGCTGAGAAGGGTCTGGCCAGAGAGGCCATTGGCTTGTATGATCAAATGGAAGAGGCTCGCTTGAAGTTAGACAATGGGACTGTAATAAGTATATTGGCTGCTTGTGCCGAGTCTGGTTTGCTTGGGCTTGGTCAGAAAGTACATGCTTCCATTAAGAAGAACAATTTCAAATGCACTACTGAAATTTCCAATGCTTTGGTTGATATGTATGCAAAATGCGGTAGGTTGGATATCGCATACAATGTCTTTAATGGCATTAGAAATAAAGATGTTGTGTCTTGGAATGCTATGCTGCAAGGGCTGGCAATGCATGGGCATGGAGAGAAAGCGCTTGAGCTTTTCAAAAGAATGAATGAAGAGGGCTTCTCCCCCGACAAAGTTACGATGATCGGAGTCTTGTGTGCTTGTACACATGCGGGATTGATCGACGATGGCATTCGATACTTCTCTACCATGGAAAGGGACTATGCCATTGCTCCTCAAGTTGAGCATTACGGTTGCATGGTAGACCTTCTGGGTCGCAAGGGAAGGCTTGAAGAAGCCATCGGGCTCATTCGCACCATGCCAGTGGAACCAAATGCAGTTATTTGGGGCACCCTTTTAGGTGCGTGTCGAATGCACAATGCTGTCGAACTTGCGACAGAGGTTCTCGATCATTTGGTTAAGTTGGAACCATCTGATCCAGGTAATTTATCCATGTTGTCGAACATATATGCTGCAGCTGGGGACTGGGACTGTGTCGCCGATGTGAGGCTGAGAATGCGGAGTATTGGAAATCAAAAACCGTCGGGTGCTAGTTCCATCGAGGTCGACAATGAGGTTCATGAATTTACAGTGTTTGATAGATCGCATCCAAAATCTGATAAGATATATCAGGTGATTAACGGATTGCGCCATGAACTTAAACAAGTTGTGTGCTTTTCAAACATGTGTTAA 1806 46.18 MQMCSVPIRNPSWFSTRKLFEQKLSDLHKCTDLNQVKQLHAQILKSDLHLDLYVVPKLISAFSLCRQMPLATNAFNQIQNPNVHLYNTLIRAHAHNSQPSQAFATFFAMQSHQFYPDNFTFPFLLKACSGQLWFPVIEMAHAQIEKFGFMSDVFVPNSLIDSYSKCGSRGIAAANKFFVSMGNCRDVVSWNSMISGFAKGGLYEEARKLFDEMPERDAISWNTMLDGYVKAGQMDDAFKLFDEMPQRNVVSWSTMVLGYCKVGDMEMARMLFDNMPVKNMVSWTIIISGFAEKGLAREAIGLYDQMEEARLKLDNGTVISILAACAESGLLGLGQKVHASIKKNNFKCTTEISNALVDMYAKCGRLDIAYNVFNGIRNKDVVSWNAMLQGLAMHGHGEKALELFKRMNEEGFSPDKVTMIGVLCACTHAGLIDDGIRYFSTMERDYAIAPQVEHYGCMVDLLGRKGRLEEAIGLIRTMPVEPNAVIWGTLLGACRMHNAVELATEVLDHLVKLEPSDPGNLSMLSNIYAAAGDWDCVADVRLRMRSIGNQKPSGASSIEVDNEVHEFTVFDRSHPKSDKIYQVINGLRHELKQVVCFSNMC 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54967442 54969442 - Hsped.02g21020.1 Hepe02g2102 563603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2102 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Hepe02g2102 601 Pfam PPR repeat family 379 426 IPR002885 -
Hepe02g2102 601 Pfam PPR repeat family 217 249 IPR002885 -
Hepe02g2102 601 Pfam PPR repeat family 279 326 IPR002885 -
Hepe02g2102 601 Pfam PPR repeat family 81 128 IPR002885 -
Hepe02g2102 601 NCBIfam pentatricopeptide repeat 382 415 IPR002885 -
Hepe02g2102 601 NCBIfam pentatricopeptide repeat 281 314 IPR002885 -
Hepe02g2102 601 NCBIfam pentatricopeptide repeat 85 117 IPR002885 -
Hepe02g2102 601 NCBIfam pentatricopeptide repeat 188 217 IPR002885 -
Hepe02g2102 601 NCBIfam pentatricopeptide repeat 219 249 IPR002885 -
Hepe02g2102 601 NCBIfam pentatricopeptide repeat 250 279 IPR002885 -
Hepe02g2102 601 Gene3D Tetratricopeptide repeat domain 334 446 IPR011990 GO:0005515(InterPro)
Hepe02g2102 601 Gene3D Tetratricopeptide repeat domain 447 568 IPR011990 GO:0005515(InterPro)
Hepe02g2102 601 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 16 134 - -
Hepe02g2102 601 FunFam Pentatricopeptide repeat-containing protein 185 246 - -
Hepe02g2102 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 216 IPR002885 -
Hepe02g2102 601 Pfam PPR repeat 188 216 IPR002885 -
Hepe02g2102 601 Pfam PPR repeat 454 478 IPR002885 -
Hepe02g2102 601 Gene3D Tetratricopeptide repeat domain 137 247 IPR011990 GO:0005515(InterPro)
Hepe02g2102 601 Gene3D Tetratricopeptide repeat domain 16 132 IPR011990 GO:0005515(InterPro)
Hepe02g2102 601 Gene3D Tetratricopeptide repeat domain 248 333 IPR011990 GO:0005515(InterPro)
Hepe02g2102 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Hepe02g2102 601 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 353 582 - -
Hepe02g2102 601 PANTHER OS07G0578800 PROTEIN-RELATED 220 277 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Hepe02g2102 601 Pfam E motif 497 559 IPR046848 -
Hepe02g2102 601 Pfam E+ motif 564 584 IPR046849 -
Hepe02g2102 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Hepe02g2102 601 FunFam Pentatricopeptide repeat-containing protein 247 344 - -
Hepe02g2102 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Hepe02g2102 601 SUPERFAMILY TPR-like 201 534 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2102 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2102 Hepe-Chr2:54967442 Hepe10g1317 Hepe-Chr10:49053636 2.33e-103 dispersed
Hepe02g2102 Hepe-Chr2:54967442 Hepe05g0744 Hepe-Chr5:14451695 1.48e-73 wgd
Hepe02g2102 Hepe-Chr2:54967442 Hepe07g1398 Hepe-Chr7:46068985 5.48e-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1173 . . . . . . . . Cmo04g02524 . . . . . . . . Bhi04g01837 . . . Hepe02g2102 . Lcy10g1297 . . . . . . . . . . Cone20ag0413 . . . . . . . . . . Bma01g00880 . . . . . . Car04g02324 . . . . . . . . . . . . . . . . . Lsi08g00508 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002649 3 11 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 2 2 1 2 2 3 3 2 55