Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2137 ATGAATGCCAAATTGTGGGATGCTTTGCCCACCATTCTCATGGTGTTGGTTCAGTTCGGGTTTGCTGGAGTCAACATTTTCTACAAATTAGCTGTCGCTGATGGAATGAGTTTGAGGATTATTATTGCTTATCGTTTCTTATTTGCCTCCGCTTTCATGGTCCCAATCGCGTTCTTCCTCGAAAGAGGCAGAAGGCCAAAGCTCAGTTGGTCGGTTCTCTTCTATGCCTTTCTCTCTGGACTATTTGGGGGATCGTTGACTCAAAATCTATACGTGGAGAGCTTGGCTTTGACTTCTGCAACATTCGCTTCAGCCATTGGTAATCTTGTCCCAGCCATCACCTTCATTTTAGCCGTCTCCTTCAGAATGGAGAAATTGAAGATAAAAACAATAGGAGGGAAGGCAAAGGTGGTGGGAACATTAATAGGAATAAGTGGGGCCATGCTTCTCACATTCTACAAAGGAATGGAGCTTCATCTATGGTCAACCCACGTTGACCTTTTGCATGAAAATCATCTGTCAGGAGGACACGTGGGAGCTTCACAACACAACATCAATAGTCAGCTGTTGGGGAGTTTGCTGGGTGTTGGAAGCTGCTTGTCGTATGCTTTATGGCTCATCTTGCAGGCTAAAATGGGTGAATGCTATCCTTGCTACTACTCAAGTACTGCGTTGATGTGTTTGATGGGATCGATTCAAGCGGTTGGTTTTGCTTTGTGCGTTGAAAGGGAGTGGAATGAGTGGAAATTGGGTTGGAATATTAGGCTTCTCTCCGTCGCATATATCGGGATCGTGGCTTCTGGAGCCATGGTAACCCTAATATCATGGTGCGTACGAATGAGAGGGCCAATGTTTGTATCAGTTTTCAGCCCTCTTATTCTGGTCCTCGTTGCCATAGCTGCCTCCTTGTTTCTCGATGAAAAGCTCTACTTGGGATGCGTGGTTGGAGGAATGTTGATTGTATGCGCATTATACATAGTATTGTGGGGTAAAAGCAAAGAGATGAAAAAGATTACACAATTGACACCCGTGGAAAGCATTGAGCACCAACCTGGAGTGATAGATTTGATCATCATTTCATCTCCAATTCCATGTCGAAAAACGGAAACATGTTCTCATGAATCTAACAACCCTAATCACATCAACCATTAG 1152 44.27 MNAKLWDALPTILMVLVQFGFAGVNIFYKLAVADGMSLRIIIAYRFLFASAFMVPIAFFLERGRRPKLSWSVLFYAFLSGLFGGSLTQNLYVESLALTSATFASAIGNLVPAITFILAVSFRMEKLKIKTIGGKAKVVGTLIGISGAMLLTFYKGMELHLWSTHVDLLHENHLSGGHVGASQHNINSQLLGSLLGVGSCLSYALWLILQAKMGECYPCYYSSTALMCLMGSIQAVGFALCVEREWNEWKLGWNIRLLSVAYIGIVASGAMVTLISWCVRMRGPMFVSVFSPLILVLVAIAASLFLDEKLYLGCVVGGMLIVCALYIVLWGKSKEMKKITQLTPVESIEHQPGVIDLIIISSPIPCRKTETCSHESNNPNHINH 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 57306416 57311475 - Hsped.02g21370.1 Hepe02g2137 563638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2137 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 152 - -
Hepe02g2137 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 333 - -
Hepe02g2137 383 PANTHER WAT1-RELATED PROTEIN 12 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Hepe02g2137 383 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020(InterPro)
Hepe02g2137 383 Pfam EamA-like transporter family 12 150 IPR000620 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2137 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2137 Hepe-Chr2:57306416 Hepe04g0525 Hepe-Chr4:57940368 7.07e-78 dispersed
Hepe02g2137 Hepe-Chr2:57306416 Hepe02g2139 Hepe-Chr2:57390556 3.56e-78 proximal
Hepe02g2137 Hepe-Chr2:57306416 Hepe02g2140 Hepe-Chr2:57396476 1.43e-51 proximal
Hepe02g2527 Hepe-Chr2:72006626 Hepe02g2137 Hepe-Chr2:57306416 1.23e-143 transposed
Hepe02g2137 Hepe-Chr2:57306416 Hepe04g0293 Hepe-Chr4:48130966 1.20e-38 wgd
Hepe02g2137 Hepe-Chr2:57306416 Hepe07g1728 Hepe-Chr7:59299644 6.67e-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000896 0 10 2 1 1 2 2 2 2 3 2 2 1 2 4 1 2 4 0 2 2 3 4 4 4 6 3 2 2 12 87