Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2146 ATGAACCTGGGCATTGTTCTTTTCTGGATCATACAGATCTTGATTCTTGCCATTGGAGTTGTTTCTAAAACCAAAGCACCAGATGTATCTGCACTGAATGTGATGTACAGTAGTTTAAATTCACCATCACAACTATCTGGTTGGTCGAAAAGTGGGGGTGACCCATGTGGCGACTCTTGGGAAGGGATCCAATGCTCAGGATCATCCGTCACCGAAATTGATTTGAGCAAGAACAACCTCAATGGCGATATCCCCTATCAGCTTCCTCCTAATGCAGTTCACATTGATCTTTCTGAAAATAGCTTCACTGGTAGTGTGCCTTATTCAATTTCTCAGATGCCTGATCTTCAATTTTTAAATCTTGCTCATAACCAGCTGACTAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGCATGCACATACAAGAAAATAAATTTTCAGGTTCAATTAATGTTCTTGCTAACCTCCCACTTGATGATTTAACGGTAGGAAATTCATGGTCGAGTGGACCAGCTCCACCTCCACCACCAGGCACAGTGTCTCCGAAGGGCAAAAACTCGAACGAAAAGGAATCGAAAGGCGGGTTCTTCTCGGGGATGAATGGGATGATCATAGCAGGAATAGTGATGGGAGTTCTAGGTTTGATCGCGGTTATAATTGCATTGGCGTCGAGAAGATCTCCTCCATCACATTACCTAGACGAAGACCCAAGCCAATCCCACAACAACCACAAGGACGACATTGAGAGAAAATCATTCAATTCAGATACTTCTATTGACATAAAGAGCCTTCAGAAATCTTCTAGTGGGCTTATAAGACCTCCTCCGCCTCATGATCGTGTGCAGTCATTCAGTGATAATCAGTTTGCCACTCGTCTTAACTCCGGAAGAAGCACTTCCTTTCGCGCCGTTGGTTTCTCCTTGGCTGATTTGCAAACTGCTACTTCCAACTTTGTTTCTGCTCGCCTAATTGGTACCGGCACTATTGGACGTGTTTACAAGGCTAAGTATGGAGATGGCAAGGTTTTAGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGAAGGAGAACAGAAGAATTTTCTGAAGTAGTTGCAATAATCTCAAGGCTTCACCACACAAACATTACAGAAGTTGTTGGATTTTGTTCAGAACAAGGACAGCACATGCTGGTTTATGAATTTTTCACCAATGGTTCACTTCATGAGTTTCTTCATATGTCAGATGACTTCAGTAAACCACTCACATGGAACACTAGAGTCAGAATCGCTTTGGGGACAGCAAGAGCTCTTGAGTACCTTCACGAAGTTTGCTCACCATCCATAATTCACATGAATATTAAGTCCTCTAATATATTACTTGATGCGGAACTTAATCCTCGACTCTCAGACTATGGTTTGGCAACTTTTTATAAGAATAGAAGTGAAAACCCTGGAGCTGGATATGATGCTCCAGAATGCATAAAGGGTTCAACTTATACAATGAAGAGTGACATTTACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACAGGGCGGATGCCTTACAATGCAACAAAGCCAAAGGTGGAACAAAGTCTAGTCCGATGGGCAAGCCCACAGCTGCATGACATTGATGCATTGGACAAAATGGTGGATCCAGCATTGAGAGGGTTATATCCACCAAAGTCAGTTTCTAGATTTGCAGATATCATTGCCCTTTGTGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAGGTGGTGCAAGCATTGGTAACTTTGGTTCAACGATCCAGTATGAATGTCAGAGATGATCTTGGAAACTCTCGAAGAATGGATGATTATGACTATTAA 1851 42.3 MNLGIVLFWIIQILILAIGVVSKTKAPDVSALNVMYSSLNSPSQLSGWSKSGGDPCGDSWEGIQCSGSSVTEIDLSKNNLNGDIPYQLPPNAVHIDLSENSFTGSVPYSISQMPDLQFLNLAHNQLTNQLSDMFGKLSKLKSMHIQENKFSGSINVLANLPLDDLTVGNSWSSGPAPPPPPGTVSPKGKNSNEKESKGGFFSGMNGMIIAGIVMGVLGLIAVIIALASRRSPPSHYLDEDPSQSHNNHKDDIERKSFNSDTSIDIKSLQKSSSGLIRPPPPHDRVQSFSDNQFATRLNSGRSTSFRAVGFSLADLQTATSNFVSARLIGTGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFSEVVAIISRLHHTNITEVVGFCSEQGQHMLVYEFFTNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKNRSENPGAGYDAPECIKGSTYTMKSDIYSLGVVMLELLTGRMPYNATKPKVEQSLVRWASPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNVRDDLGNSRRMDDYDY 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 57961275 57971977 - Hsped.02g21460.1 Hepe02g2146 563647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2146 616 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 288 399 - -
Hepe02g2146 616 SUPERFAMILY Protein kinase-like (PK-like) 303 590 IPR011009 -
Hepe02g2146 616 PANTHER LEUCINE RICH REPEAT KINASE 2 24 177 IPR051420 -
Hepe02g2146 616 SUPERFAMILY L domain-like 26 161 - -
Hepe02g2146 616 Gene3D Transferase(Phosphotransferase) domain 1 400 613 - -
Hepe02g2146 616 Gene3D Phosphorylase Kinase; domain 1 285 399 - -
Hepe02g2146 616 Pfam Leucine rich repeat 69 126 IPR001611 GO:0005515(InterPro)
Hepe02g2146 616 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Hepe02g2146 616 Pfam Protein kinase domain 324 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2146 616 MobiDBLite consensus disorder prediction 233 259 - -
Hepe02g2146 616 ProSiteProfiles Protein kinase domain profile. 322 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2146 616 FunFam Leucine-rich repeat receptor-like kinase 27 133 - -
Hepe02g2146 616 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Hepe02g2146 616 MobiDBLite consensus disorder prediction 169 198 - -
Hepe02g2146 616 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 400 604 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2146 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2146 Hepe-Chr2:57961275 Hepe03g1378 Hepe-Chr3:70423070 4.86e-150 dispersed
Hepe02g2146 Hepe-Chr2:57961275 Hepe08g1507 Hepe-Chr8:18875861 3.62e-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe07g1580 . 389 682 Strubbelig Receptor Gene Family AT1G11130 53.7 2.1e-85 313.9
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe02g1584 . 11 715 Strubbelig Receptor Gene Family AT1G53730 60.9 7.4e-214 740.7
Hepe03g1378 . 12 710 Strubbelig Receptor Gene Family AT1G53730 61.4 1.8e-191 666.4
Hepe02g1584 . 13 710 Strubbelig Receptor Gene Family AT3G14350 51.5 1.2e-184 643.7
Hepe03g1378 . 21 714 Strubbelig Receptor Gene Family AT3G14350 53.3 8.5e-167 584.3
Hepe07g1580 . 150 712 Strubbelig Receptor Gene Family AT4G22130 64.0 4.8e-176 614.8
Hepe02g1584 . 394 722 Strubbelig Receptor Gene Family AT4G22130 62.8 1.1e-119 427.6
Hepe03g1378 . 403 716 Strubbelig Receptor Gene Family AT4G22130 64.9 1.9e-116 416.8
Hepe02g0159 . 480 775 Strubbelig Receptor Gene Family AT4G22130 61.3 6.2e-107 385.2
Hepe04g1828 . 439 752 Strubbelig Receptor Gene Family AT4G22130 56.2 6.8e-98 355.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72581 PF00069 Pkinase 1.50E-43 CL0016 Hepe PK