Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2215 ATGTTATTGACCCTGTGTTTGAAGAGAAGTTCAATTCTGGGTACCATGATGAGAATTTGCTGCCATCAGAGAAATAAACTTTCACTATGTAGATTGTTAGCTAGGCTGTATAGTTCTGATGAACAAATTGATACGGTATCGGATTCAATCAGAAGTATATGTAAAATCATGATGACATGCCAAACGCCGGTGCTCGAGACCGCCCTTGACCAGAGTGGAATTAGGATTTCACCTGAGATAGCTGAGGCCGTCCTCAAAAGATTTGAAAATGCTGGCATGTTAGCTTATAGGTTCTTTGAATGGGCTTCCAAACAAAGAAGCTATGCCCATAGTGTTAGGGCTTACCACTCTTTGATTGAATCTTTAGCTAAGATAAGGCAGTACCAGATGGTGTGGGATCTGGTGAATGCTATGAGGAATAAGGAGATTCTAAATGTTGAGACCTTTTGTATTATCATGAGAAAGTATGCTAGAGCTCAAAAAGTAGAAGAAGCACTTTATACATTTAATGTCATGGAAAAATATAACATGAAACCAAATGTAGTTGCATTTAATGGATTGCTGAGCGCTTTGTGCAAGTCCAAGAATGTGAGGAAGGCTCAGGAAATTTTTGACAGTATGAAGGACCAGTTTGTTCCTGATTCAAAAACTTACAGTATACTCATTGAAGGATGGGGTAGGGCTCCAAATCTTCCCAGGGCCAGGGAGGTTTTTAGAGAAATGATGGATAGCGGCTGCATTCCCGATACAGTGACGTATAGCATTATGGTTGATGTTCTTTGCAAGGCAGGAAGAGTTGACGAAGCAGTTGGGATTGTACAAGAAATGGATTCTAATAACTGTACACCATCATCATTTGTCTATAGTGTTTTGGTACATACGTATGGCGTAGAAAATCGGATTGAGGATGCAGTCTCTACATTCTTGGAGATGGAAAGAAATGGAGTTATGGCTGATGTGGCAGCGTATAATGCTTTAATCACTGCTTTCTGCAAAGCAAACAAGATTAAGAATGTGTATAGGGTGTTAAAGGACATGGAGTTAAAGGGTGTTAACCCCAATTCAAGGACTTGCAACATCATTATAAACAGCTTAATAGGCAATGAGGAGACAGATGAGGCGTTTAGGATGTTTCGTCGGATGGTCAAAGTGTGTGAACCAGATGTAGACTCCTATACCATGATCATCAAAATGTTTTGTGGGAGGAAGGAGCTTGATATGGCTCTTAAAGTATGGAAGTATATGAAGAAGAAGCAGTTCGTTCCGAGCATGCACACATTTTCTGTTCTTATTAATGGACTGTGTCAGACTGGCAATGCTACACAAGCTTGTGTGTTGTTGGAAGAGATGATAGAGAAGGGAATACGGCCTTCTCGTGTTACATTTGGAAGGTTGAGACATTTATTAATCAAGGAAGGCAGAGAAGATGTTCTAAAATTTCTGCAGGAGAAAATGAATCTACTGGTCAAGGAGCCATTATGTGATTGA 1488 40.05 MLLTLCLKRSSILGTMMRICCHQRNKLSLCRLLARLYSSDEQIDTVSDSIRSICKIMMTCQTPVLETALDQSGIRISPEIAEAVLKRFENAGMLAYRFFEWASKQRSYAHSVRAYHSLIESLAKIRQYQMVWDLVNAMRNKEILNVETFCIIMRKYARAQKVEEALYTFNVMEKYNMKPNVVAFNGLLSALCKSKNVRKAQEIFDSMKDQFVPDSKTYSILIEGWGRAPNLPRAREVFREMMDSGCIPDTVTYSIMVDVLCKAGRVDEAVGIVQEMDSNNCTPSSFVYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALITAFCKANKIKNVYRVLKDMELKGVNPNSRTCNIIINSLIGNEETDEAFRMFRRMVKVCEPDVDSYTMIIKMFCGRKELDMALKVWKYMKKKQFVPSMHTFSVLINGLCQTGNATQACVLLEEMIEKGIRPSRVTFGRLRHLLIKEGREDVLKFLQEKMNLLVKEPLCD 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 62734348 62736717 - Hsped.02g22150.1 Hepe02g2215 563716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2215 495 NCBIfam pentatricopeptide repeat 217 250 IPR002885 -
Hepe02g2215 495 NCBIfam pentatricopeptide repeat 148 181 IPR002885 -
Hepe02g2215 495 NCBIfam pentatricopeptide repeat 182 210 IPR002885 -
Hepe02g2215 495 NCBIfam pentatricopeptide repeat 357 383 IPR002885 -
Hepe02g2215 495 NCBIfam pentatricopeptide repeat 425 458 IPR002885 -
Hepe02g2215 495 NCBIfam pentatricopeptide repeat 287 319 IPR002885 -
Hepe02g2215 495 NCBIfam pentatricopeptide repeat 322 354 IPR002885 -
Hepe02g2215 495 NCBIfam pentatricopeptide repeat 391 423 IPR002885 -
Hepe02g2215 495 NCBIfam pentatricopeptide repeat 251 284 IPR002885 -
Hepe02g2215 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Hepe02g2215 495 Pfam PPR repeat 245 276 IPR002885 -
Hepe02g2215 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Hepe02g2215 495 SUPERFAMILY TPR-like 110 414 IPR011990 GO:0005515(InterPro)
Hepe02g2215 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 210 IPR002885 -
Hepe02g2215 495 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 176 476 IPR051240 GO:0003729(PANTHER)
Hepe02g2215 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 384 IPR002885 -
Hepe02g2215 495 Pfam PPR repeat family 179 224 IPR002885 -
Hepe02g2215 495 Pfam PPR repeat family 319 365 IPR002885 -
Hepe02g2215 495 Pfam PPR repeat family 387 436 IPR002885 -
Hepe02g2215 495 Gene3D Tetratricopeptide repeat domain 59 209 IPR011990 GO:0005515(InterPro)
Hepe02g2215 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Hepe02g2215 495 Gene3D Tetratricopeptide repeat domain 210 349 IPR011990 GO:0005515(InterPro)
Hepe02g2215 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Hepe02g2215 495 Gene3D Tetratricopeptide repeat domain 365 490 IPR011990 GO:0005515(InterPro)
Hepe02g2215 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Hepe02g2215 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Hepe02g2215 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Hepe02g2215 495 Pfam PPR repeat 148 176 IPR002885 -
Hepe02g2215 495 Pfam PPR repeat 287 316 IPR002885 -
Hepe02g2215 495 Pfam PPR repeat 114 142 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2215 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1168 Hepe-Chr2:14540161 Hepe02g2215 Hepe-Chr2:62734348 1.60e-19 dispersed
Hepe02g2215 Hepe-Chr2:62734348 Hepe02g2662 Hepe-Chr2:74245610 8.84e-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32