Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2219 ATGAAGAACATAGTTAGAAGTAAATGCGTTAAGGAAGAGAATCACAGTAGCAGCGGAATTTTCTGTGGTCGTCACTTTCCTCGAAACTTACAGACGAAGTCACATACCCACAGAACAGAAGTATTTCAAATTTCAATCCTAAATCCATTCTCGAGCACCATTTCTTTTCCTTCAGGAATGAGCTTTCTGAGGCCCTTTATGTTGTGTTCTTCGCTTCGCTGGATGACCTGCCAGAGTTGGGGTTTCCCCAGATGGCCTGGATTTGACGGTTTCCTCAGATTTCTTGTGCTTTTGATTTTGTGGTCTATGCTTTTGGAGATTCATTCCATTCCTTCCTCATCAATGTATCCAACTCTTCGTGTCGGAGATCGATTTCTTGTCGAGAAGGCCTCTTATTACATCACAAGTCCCTCTATAGATGACATTATTACCTTCCGAGACCCGACACAGCAATCTGAACGAAGAGAAGAGAGCGTAGTTGTAAAGAGAGTTGTTGCAAAAGCGGGAGACATGGTTGAGGTTTGTGAGGGATGCCTCTATGTCAATGGAATTTCGAAGGATGAAAGCTTCTTAGCGGAGCGGCCAACATACACCACAAAGTCAACTCAAGTTCCAGAAGGCCATGTTTACGTGTTGGGCGACAACCGCAACAACAGCTACGACTCCCATATTTGGGGACCTCTGCCCATCAAGAACATCATTGGGAGATACCTCTGGTCTTGCCACAAACCAACAAGTTGA 741 44.67 MKNIVRSKCVKEENHSSSGIFCGRHFPRNLQTKSHTHRTEVFQISILNPFSSTISFPSGMSFLRPFMLCSSLRWMTCQSWGFPRWPGFDGFLRFLVLLILWSMLLEIHSIPSSSMYPTLRVGDRFLVEKASYYITSPSIDDIITFRDPTQQSERREESVVVKRVVAKAGDMVEVCEGCLYVNGISKDESFLAERPTYTTKSTQVPEGHVYVLGDNRNNSYDSHIWGPLPIKNIIGRYLWSCHKPTS 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 62974589 62978103 - Hsped.02g22190.1 Hepe02g2219 563720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2219 246 PRINTS Bacterial leader peptidase 1 (S26A) family signature 160 172 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Hepe02g2219 246 PRINTS Bacterial leader peptidase 1 (S26A) family signature 103 119 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Hepe02g2219 246 PRINTS Bacterial leader peptidase 1 (S26A) family signature 204 223 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Hepe02g2219 246 Gene3D Umud Fragment, subunit A 112 243 - -
Hepe02g2219 246 PANTHER SIGNAL PEPTIDASE I 90 242 IPR000223 GO:0004252(PANTHER)|GO:0005887(PANTHER)|GO:0006465(PANTHER)|GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)
Hepe02g2219 246 CDD S26_SPase_I 110 236 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Hepe02g2219 246 ProSitePatterns Signal peptidases I signature 3. 209 222 IPR019758 GO:0004252(InterPro)|GO:0016020(InterPro)
Hepe02g2219 246 FunFam Peptidase/ serine-type peptidase 112 241 - -
Hepe02g2219 246 Pfam Signal peptidase, peptidase S26 94 237 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Hepe02g2219 246 SUPERFAMILY LexA/Signal peptidase 103 239 IPR036286 -
Hepe02g2219 246 NCBIfam signal peptidase I 93 239 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Hepe02g2219 246 ProSitePatterns Signal peptidases I serine active site. 112 119 IPR019756 GO:0004252(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2219 K03100 - - csv:101221795 326.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2219 Hepe-Chr2:62974589 Hepe09g0765 Hepe-Chr9:7388047 2.14e-45 dispersed
Hepe02g2219 Hepe-Chr2:62974589 Hepe01g1727 Hepe-Chr1:82449031 4.17e-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g227 . . . . . . . . Cmo04g02501 Cmo15g00666 . . . . Sed01g3097 . . Bhi04g01876 Tan11g1248 Cmetu03g2013 . Hepe02g2219 . Lcy10g1247 Cla08g00618 Cam08g1032 Cec08g0621 Cco08g0733 Clacu08g0742 . Cre08g0550 . . . Cone20ag0430 . . . . . . . Bda01g01456 Bpe02g01653 . Bma01g00801 . . . . . . Car04g02307 Car15g00606 Cpe01g02069 . . . . . . . . . . . . . . . Lsi08g00458 . Chy03g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011233 1 1 0 1 1 1 2 1 1 1 1 1 0 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31