Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2221 ATGTCAGCACATAATCGCCGCCCGTCGTTTTCCTCGTCGACGTCCTCGTCCTTGGCCAAACGACAAGCGTCGTCGGCCGATATTGTCGGAAAGGTTATGGCAGTTCCACCGCACTTGGCGAAGAAGCGAGCGCCACTCGGTAACCTTACCAATCTTAAGAATGTTTCTCATACTGCTGCGAAAACCTCTGTTCCGCCTGCTATATTGGTGCCTTGTGCAACCAAAGCTGTCAAGGCCAGAAAGAGTTCTCCTGCTAGAACTCGTAGAACAAACTTGCCAGCGAATAATACGACGACATTGCTCGATGTCAAAACGACGAGTGCAGTTGCCCCTAGTAATGTTGCAGCTTTCTCAAGAACTGAGGCCACCGCGGTCTCTAGTAGTATGGACGTCTCTCCGACTAAATCAGATGGAGTTTCAGTTTCTGTAGATGAAACTATGTCTACTTGTGATTCTTTCAAGAGCCCCGACGTTGAGTACATGGACAATAATGATGTTCCTGCAGTTGATTCCGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCACGCACCAATTAGTAGTCAGGCACCAATTAAAGGTAGTATATGCAATAGAGATGAACTTGCAGACATGGAAACCGATGATGATATCATTGATGTCGATACTGATTTCATGGATCCTCAACAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTGCGAGCATCTGAGGCAAAGAAAAGGCCTTCTACAGACTTCATGGAAAAAGTTCAGAAGGATATAAATTCAAATATGCGCTCCATACTGGTTGATTGGCTTGTGGAGGTAGCAGAAGAGTACAGGCTTGTGCCAGATACTCTATATTTGACCGTGAACTACATAGATCGATACCTATCTGGAAATTCGATGGATCGACAACGGTTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCATCAAAATATGAAGAGATTTGTGCTCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGAAGAGGTATTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACAGCTCCAACGCCGAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGTGCCGATGAGGTTTCATCAATGCAGTTGGAGTGCTTGTCCAACTTCCTTGCTGAATTATCTCTTTTAGAATATAGTATGCTCGGCTACGCCCCGTCGCTTGTAGCTGCCTCAGCAATTTTCTTGGCGAAGTTCATTCTTCTCCCAACTAAGATACCATGGAACTCGACCTTGCAGCATTATACGCGTTATCAGCCATCCGATCTTGTCGACTGCGTTAAGGATTTACATCGCCTCTGCTGTAACACTCATAATTCTAGCTTACCAGCAATCAGAGAGAAATACAGCCAGCATAAGTACAAACACGTGGCGAAGAAGTGCTGCCCTCCGTCGATACCTCCGGAGTTCTTCCAGAATCAAACACAGTAG 1494 44.38 MSAHNRRPSFSSSTSSSLAKRQASSADIVGKVMAVPPHLAKKRAPLGNLTNLKNVSHTAAKTSVPPAILVPCATKAVKARKSSPARTRRTNLPANNTTTLLDVKTTSAVAPSNVAAFSRTEATAVSSSMDVSPTKSDGVSVSVDETMSTCDSFKSPDVEYMDNNDVPAVDSVERKTKSSLCISGHAPISSQAPIKGSICNRDELADMETDDDIIDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKVQKDINSNMRSILVDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGADEVSSMQLECLSNFLAELSLLEYSMLGYAPSLVAASAIFLAKFILLPTKIPWNSTLQHYTRYQPSDLVDCVKDLHRLCCNTHNSSLPAIREKYSQHKYKHVAKKCCPPSIPPEFFQNQTQ 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 62982401 62986078 - Hsped.02g22210.1 Hepe02g2221 563722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2221 497 ProSitePatterns Cyclins signature. 263 294 IPR048258 -
Hepe02g2221 497 Pfam Cyclin, N-terminal domain 232 359 IPR006671 -
Hepe02g2221 497 FunFam Cyclin A1 348 480 - -
Hepe02g2221 497 SMART cyclin_7 365 453 IPR013763 -
Hepe02g2221 497 SMART cyclin_7 268 352 IPR013763 -
Hepe02g2221 497 PANTHER CYCLINS 211 472 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe02g2221 497 SMART Cyclin_C_2 361 484 IPR004367 -
Hepe02g2221 497 SUPERFAMILY Cyclin-like 222 358 IPR036915 -
Hepe02g2221 497 CDD CYCLIN_AtCycA-like_rpt2 361 475 - -
Hepe02g2221 497 CDD CYCLIN_AtCycA_like_rpt1 222 357 - -
Hepe02g2221 497 SUPERFAMILY Cyclin-like 361 486 IPR036915 -
Hepe02g2221 497 Pfam Cyclin, C-terminal domain 361 482 IPR004367 -
Hepe02g2221 497 Gene3D - 246 359 - -
Hepe02g2221 497 MobiDBLite consensus disorder prediction 1 23 - -
Hepe02g2221 497 FunFam Mitotic cyclin 6 246 346 - -
Hepe02g2221 497 MobiDBLite consensus disorder prediction 1 25 - -
Hepe02g2221 497 PIRSF Cyclin_A_B_D_E 1 490 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Hepe02g2221 497 Gene3D - 232 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0610 Hepe-Chr1:67392318 Hepe02g2221 Hepe-Chr2:62982401 2.53e-11 dispersed
Hepe02g2221 Hepe-Chr2:62982401 Hepe08g1309 Hepe-Chr8:14807717 1.11e-93 dispersed
Hepe02g2221 Hepe-Chr2:62982401 Hepe03g1583 Hepe-Chr3:72721886 3.33e-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2221 K06627 - csv:101221569 872.848