Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2230 ATGCCCTCATTGTCATTTAATTTGAGACCCCTTCTAATGACGAAGAGGCTCAGTCCCACTCCACCTTCCACTCCCTCCGCCAAGCCACCGCCATCACCGCCGTCTCCTCCGACCCCTCAACCCTCCCACTCAAGGCCCACCACCGTCGTATCCAAGAACCCAAAGAAAAGGAAAACCCCAACCCTCCTCAAATCCCCATCATCCTCCTCAACCCCTCCCAATTGGGTTCCCCTCAATCTCACCAAATCAGACCTCTCGCTGCCTCTCACTTTCCCCACCGGCCAAACCTTCCGCTGGAAACAAACCGCCCCCCTTCACTTCACCGGCGTCGTTGCCTCTCATCTTATCTCTCTCAACCACCTTCCAAATGGCGACGTTTCATATTGCCTTCACTCCTGTTCAACATCATCCTCCTCCTCCTCCGCCGCCGCCGCCAGATTGGCCTTGCTCGATTTCCTTAACGCCGGCATCTCCCTGAGTGCCATTTGGGAGGTCTTCTCGGCGGCTGATCCGAGATTCCATGTGTTGGCTCGCCATTTGGAAGGTGCTCGAGTTCTCAGGCAAGACCCACTTGAGTGTTTGATTCAATTTTTGTGTTCTTCCAATAACAATATTGGGAGAATCACCAAAATGGTGGATTACATCTCATCGCTTGGGGATTATTTGGGCAATGTTGGAGGTTTTGATTTCCATGAATTCCCCTCTTTGGAGAGGCTGTCCTTGGTCTCTGAGGCTGACCTTAGAGTGGCAGGCTTTGGTTACAGGGCTAAGTACATAGTTGGCACTGTAAATGCTCTAGAAGCCAAAGCTGGGGGAGGTGCAGAATGGCTTCTATCTCTTCGTGATTTGGACCTTGAAGAGGCGATTAATGCCCTTTCTACATTGCCTGGCGTCGGTCCAAAGGTGGCAGCTTGTGTTGCTCTCTTCTCTCTCGATCAGCACCATGCCATTCCTGTTGACACACACGTCTGGCAGGTTTCTTCTGTGTGGGATGAAAAGATTGCTACTAGGTACCTTGTCCCTGAGCTTGCTGGTGCACGTCTAACGCCAAAGCTTTGCAACCGTGTGGCGGAGGCATTTGTCAGCAAGTATGGAAAATATGCTGGTTGGGCTCAAACGCTGCTTTTCGTTGCTGATTTACCTCAACAGAAGGCCCTCTTACCATCAAATCTCGAGATTACTAAAAGGAAAAAGGCTACAAAGCAGCAGAAAGGAAACAAACAGACTGGTAATATAGGTGAATAG 1245 50.68 MPSLSFNLRPLLMTKRLSPTPPSTPSAKPPPSPPSPPTPQPSHSRPTTVVSKNPKKRKTPTLLKSPSSSSTPPNWVPLNLTKSDLSLPLTFPTGQTFRWKQTAPLHFTGVVASHLISLNHLPNGDVSYCLHSCSTSSSSSSAAAARLALLDFLNAGISLSAIWEVFSAADPRFHVLARHLEGARVLRQDPLECLIQFLCSSNNNIGRITKMVDYISSLGDYLGNVGGFDFHEFPSLERLSLVSEADLRVAGFGYRAKYIVGTVNALEAKAGGGAEWLLSLRDLDLEEAINALSTLPGVGPKVAACVALFSLDQHHAIPVDTHVWQVSSVWDEKIATRYLVPELAGARLTPKLCNRVAEAFVSKYGKYAGWAQTLLFVADLPQQKALLPSNLEITKRKKATKQQKGNKQTGNIGE 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 63252268 63254398 + Hsped.02g22300.1 Hepe02g2230 563731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2230 414 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 75 400 IPR052054 GO:0005634(PANTHER)|GO:0006285(PANTHER)|GO:0034039(PANTHER)
Hepe02g2230 414 Gene3D Hypothetical protein; domain 2 189 313 - -
Hepe02g2230 414 Gene3D - 64 152 - -
Hepe02g2230 414 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 78 194 IPR012904 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0008534(InterPro)
Hepe02g2230 414 MobiDBLite consensus disorder prediction 1 75 - -
Hepe02g2230 414 FunFam N-glycosylase/DNA lyase 189 313 - -
Hepe02g2230 414 Gene3D - 164 380 IPR023170 -
Hepe02g2230 414 SMART endo3end 199 373 IPR003265 GO:0006284(InterPro)
Hepe02g2230 414 MobiDBLite consensus disorder prediction 22 43 - -
Hepe02g2230 414 CDD ENDO3c 192 376 IPR003265 GO:0006284(InterPro)
Hepe02g2230 414 MobiDBLite consensus disorder prediction 44 75 - -
Hepe02g2230 414 SUPERFAMILY TATA-box binding protein-like 69 188 - -
Hepe02g2230 414 SUPERFAMILY DNA-glycosylase 189 379 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2230 K03660 - - csv:101219118 589.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2230 Hepe-Chr2:63252268 Hepe07g1331 Hepe-Chr7:43325508 1.77e-08 dispersed
Hepe02g2230 Hepe-Chr2:63252268 HepeContig66g0194 Hepe-ChrContig66:16504755 2.34e-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g236 . . . . . . . . . Cmo15g00669 . . . . Sed01g3102 . . Bhi04g01882 Tan11g1252 Cmetu03g0437 . Hepe02g2230 . Lcy10g1243 Cla08g00614 Cam08g1028 Cec08g0617 Cco08g0729 Clacu08g0738 . Cre08g0546 . . . . . . . Cme03g00519 . Blo18g00178 . Bda01g01453 Bpe02g01649 . Bma01g00806 . . . . . . . Car15g00609 . . . . . . . . . . . . . . . . Lsi08g00454 . Chy03g00766 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008522 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 35