Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g2236 | ATGTCGGAAGTAATTGCAGTCATGGATATTGACGACGATAATGGCAACAACGAAGTTGAAAAATCAGTCCAGGGCAAAGATGTCGCCAGTCCTGCCGCCGCACCCGACGGCAAAGCGATACCCTGGGTCGAGAAGTTCCGGCCAAAGTCTCTCGCCGATGTTGCTGCTCACCGCGACATTGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTTCTGTTGTACGGTCCTCCTGGCACTGGCAAGACATCAACTATTCTTGCGGTTGCCCGCAAGCTTTATGGAACGAACTACCACAACATGATACTGGAGCTAAACGCATCAGATGATAGAGGGATTGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTATTGGACGAGGCAGATGCCATGACCAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATATACGAAAAGTACAAGGTTTGCTCTTATCTGTAATCACGTCAATAAGATTATTCCAGCCTTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTTGATAACTTTCATGTCACCGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTCACTGAGAGTGGCTTGGCAGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTATGCACAGGAAATCCAATGCCCAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAGGCGAATATCTGAAATGAAGACCAGAAAAGGATTAGCTATGGTTGATATAGTGAGAGAAGTCACTATGTTTGTTTTTAGGATCAATATGCCATCGGGTGTCAGAGTTCAGTTGATAAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAACGACAAGTTACAACTCGGATCACTCATCTCATCTTTTACTCGAGCTAGATCTGCAATCGTTGCTGCTGCAGAGTAG | 1092 | 44.32 | MSEVIAVMDIDDDNGNNEVEKSVQGKDVASPAAAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFRRISEMKTRKGLAMVDIVREVTMFVFRINMPSGVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSAIVAAAE | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 63408645 | 63419705 | - | Hsped.02g22360.1 | Hepe02g2236 | 563737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g2236 | 363 | CDD | AAA | 60 | 198 | - | - | |
Hepe02g2236 | 363 | SMART | AAA_5 | 72 | 202 | IPR003593 | GO:0016887(InterPro) | |
Hepe02g2236 | 363 | Gene3D | - | 36 | 198 | IPR027417 | - | |
Hepe02g2236 | 363 | FunFam | Replication factor C subunit 5 | 201 | 263 | - | - | |
Hepe02g2236 | 363 | Gene3D | - | 202 | 263 | - | - | |
Hepe02g2236 | 363 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 40 | 257 | IPR027417 | - | |
Hepe02g2236 | 363 | CDD | HLD_clamp_RFC | 203 | 261 | IPR047854 | - | |
Hepe02g2236 | 363 | FunFam | Replication factor C subunit 5 | 264 | 361 | - | - | |
Hepe02g2236 | 363 | Gene3D | - | 264 | 362 | - | - | |
Hepe02g2236 | 363 | Pfam | ATPase family associated with various cellular activities (AAA) | 76 | 198 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Hepe02g2236 | 363 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 264 | 354 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
Hepe02g2236 | 363 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 41 | 355 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) | |
Hepe02g2236 | 363 | MobiDBLite | consensus disorder prediction | 10 | 35 | - | - | |
Hepe02g2236 | 363 | FunFam | Replication factor C subunit 5 | 34 | 199 | - | - | |
Hepe02g2236 | 363 | Pfam | Replication factor C C-terminal domain | 264 | 349 | IPR013748 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2236 | Hepe-Chr2:63408645 | Hepe06g1212 | Hepe-Chr6:61677618 | 7.39e-68 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g2236 | K10756 | - | csv:101217230 | 680.248 |