Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2244 ATGGCTGCTACTGCTTTTGGAAGCGCCGCCGCCGCCTCCGCCTCCGCTGCCGCCACCTCATCAACCACTCGTTTCCTCTCCTCGGCCACCAGAGCTACACTGCTCTCTTCTCGCTCCTCGTCTTCTTCCTCTTTCAAGTTCCTCAGATCGTCTCCTCTCATTTCTCACCTTTTTCTGAATCAGGGAAGGCCGACTTCTTGTGTATCAAATAGAGGATTCAATGCGGCGTCTCATCCGAAATGCCTGGCGTCGGACCCTGAGCAGCTGAAGAGTGCTAGAGAAGATATCAAGCAGCTCCTGAAGACCACATTCTGCCATCCTATTTTGGTACGCCTGGGTTGGCATGATGCTGGGACTTACAATAAAGATATCGAGGAATGGCCGCAGAGAGGTGGAGCTAATGGAAGTTTAAGATTTGATATTGAGCTAAAACATGGTGCTAATGCTGGTCTTGTTAATGCCTTGAAACTCATTGAGCCTATCAAAAAGAAGTATTCTAATGTGACATATGCAGACCTATTTCAGCTGGCCAGTGCTACAGCTATTGAGGAGGCTGGGGGACCCAAAATCCCCATGAAGTATGGGAGGGTGGATGTTGTGGGGCCAGAGCAATGCCCTGAAGAGGGGAGGCTTCCTGATGCTGGTCCTCCATCACCTGCTGCACATCTACGAGATGTTTTCTACAGAATGGGGTTGAATGACAAGGAAATAGTTGCATTATCCGGGGCACACACGTTAGGGAGATCTAGGCCAGAACGCAGTGGTTGGGGCAAGCCAGAGACCAAATATACGAAAGATGGACCTGGTGCACCTGGTGGACAATCCTGGACCGCACAATGGTTGAAGTTTGACAACTCATATTTTAAGGATATCAAAGAAAGGAGAGATGAAGAACTACTGGTGTTGCCAACTGATGCTGCTATCTTTGAAGATCCATCATTCAAGGTTTATGCTGAAAAATATGTTGATGATCAAGAAGCCTTCTTCAAAGACTATGCTGAAGCGCATGCCAAACTCAGCAACCTTGGTGCTAAATTTGACCCTCCTGAGGGTATTGTGATTGATGATGCATCCTCGAAGCCTGCAGGAGAGAAGTTTGATGCCGCCAAATACTCATATGGAAAGGATTAG 1131 48.1 MAATAFGSAAAASASAAATSSTTRFLSSATRATLLSSRSSSSSSFKFLRSSPLISHLFLNQGRPTSCVSNRGFNAASHPKCLASDPEQLKSAREDIKQLLKTTFCHPILVRLGWHDAGTYNKDIEEWPQRGGANGSLRFDIELKHGANAGLVNALKLIEPIKKKYSNVTYADLFQLASATAIEEAGGPKIPMKYGRVDVVGPEQCPEEGRLPDAGPPSPAAHLRDVFYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGQSWTAQWLKFDNSYFKDIKERRDEELLVLPTDAAIFEDPSFKVYAEKYVDDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVIDDASSKPAGEKFDAAKYSYGKD 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 63839535 63847380 - Hsped.02g22440.1 Hepe02g2244 563745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2244 376 CDD ascorbate_peroxidase 83 347 - -
Hepe02g2244 376 MobiDBLite consensus disorder prediction 244 275 - -
Hepe02g2244 376 ProSiteProfiles Plant heme peroxidase family profile. 109 364 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 SUPERFAMILY Heme-dependent peroxidases 88 345 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 24 351 IPR044831 GO:0000302(PANTHER)|GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Hepe02g2244 376 Gene3D - 92 345 - -
Hepe02g2244 376 PRINTS Haem peroxidase superfamily signature 186 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 PRINTS Haem peroxidase superfamily signature 276 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 PRINTS Haem peroxidase superfamily signature 106 120 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 PRINTS Haem peroxidase superfamily signature 168 185 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 FunFam L-ascorbate peroxidase S chloroplastic/mitochondrial 92 216 - -
Hepe02g2244 376 ProSitePatterns Peroxidases proximal heme-ligand signature. 236 246 IPR019793 -
Hepe02g2244 376 FunFam L-ascorbate peroxidase T, chloroplastic 214 337 - -
Hepe02g2244 376 Gene3D Peroxidase, domain 2 214 337 - -
Hepe02g2244 376 PRINTS Plant ascorbate peroxidase signature 305 329 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 PRINTS Plant ascorbate peroxidase signature 106 121 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 PRINTS Plant ascorbate peroxidase signature 186 198 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 PRINTS Plant ascorbate peroxidase signature 167 185 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe02g2244 376 Pfam Peroxidase 93 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2244 K00434 - - csv:101216755 641.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2244 Hepe-Chr2:63839535 Hepe04g1608 Hepe-Chr4:71538782 6.44e-72 dispersed
Hepe10g1144 Hepe-Chr10:45352442 Hepe02g2244 Hepe-Chr2:63839535 8.38e-69 wgd
Hepe02g2244 Hepe-Chr2:63839535 Hepe04g0050 Hepe-Chr4:21583532 8.83e-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g248 . . . . . . . . Cmo04g02484 Cmo15g00678 . . . . Sed01g3111 . . Bhi04g01899 Tan11g1263 Cmetu03g1741 . Hepe02g2244 . . Cla08g00603 Cam08g1017 Cec08g0607 Cco08g0718 Clacu08g0728 . Cre08g0536 . Cone7ag1522 Cone17ag1289 Cone20ag0439 . . . Cme03g00534 Blo17g00174 . . Bda13g01479 Bpe02g01647 Bpe14g00386 Bma01g00808 Bma02g00215 . . . . . Car04g02298 Car15g00616 Cpe01g02059 . . . . . . . . . . . . . . . Lsi08g00443 . Chy03g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003748 3 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 46