Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2268 ATGACCGTCGTAGCAACGGCTGCAGCTCTCTCGTTGTTGCCGATCTCTTTTTCCAGAACTCCGAAGCTCAATTTCAAGAAGAGTGTGAAAGGTGGATTTAGAGTGTTTGCCGTGTTTGGAGATGAAGGAGCTATAGAAAGGAAGAGTGGTTGGGAAACACTGTTTGATGTGGAAGATCCAAGAACAAAAGTTCCTCAATCTAAAGGCAAGTTCATAGATGTTAATCAAGCTCTGGAAGTGGCTAGAAATGACATTCAATACTGTGATTGGCGAGCTCGCCAAGATGTTCTTGCAATCATGCTCCTCCATGAAAAGGTTGTGGAAGTCTTGAATCCTCTAGCCCGTGACTATAAGTCTATCGGAACAATGAAGAAGGAGCTTTCCGGATTGCAGGGCGAATTGGCAGAAGCTCACAGACAGGTTCATATATCTGAAGCACGTGTTTCGACTGCTTTAGATAAACTAGCTTACATGGAAGAATTGGTGCATGATAGGCTGTTACAAGACAGAAACACAGCGGAGCTTGATAGCCCATCTACCTCACCTGGTCCTTCAACACAATCTCACGATTCTGTGAATAGCAGTTTGCCGCCGAAGAAAAGCTTAAATGTATCAGGACCCGTTGAACCATATCATCCCCGCTTGAAGAACTTCTGGTACCCTGTTGCTTTCTCCAGTGATCTGAAAGATGACACAATGGTCCCATTTGACTGTTTTGAAGAATCATGGGTTCTTTTTCGTGGAAAGGATGGCAATCCTGGATGCATACGAAACACATGTGCTCATAGGGCTTGCCCTCTCGACCTCGGTACAGTCAATGACGGTCGAGTCCAGTGTCCGTACCATGGTTGGGAATACTCAACAGATGGTAAATGTGAGAAAATGCCATCGACGCGACTACTAAATGTGAAAATAAAATCGTTGCCATGTTTCGAGAAAGAAGGAATGATCTGGGTTTGGCCAGGTAATGATCCTCCAGCAGCCGATCTTCCTTCACTACAACCTCCTTCTGGTTTTCAAATCCATGCTGAGCTTGTCATTGAAATTCCAGTGGAGCATGGATTACTTCTAGATAACCTTCTGGATCTTGCTCATGCACCTTTTACTCATACTTCTACATTTGCAAAAGGATGGAGTGTACCAAGCTTGGTGAAATTTTTAACCCCTGCATCTGGGCTCCAAGGATACTGGGACCCGTATCCAATCGACATGGAGTTTCGACCACCTTGTATAGTGCTATCAACTATAGGGATCTCCAAGCCAGGAAAACTAGAAGGCCAAAGTACTAGGGAATGCTCAACACATCTTCATCAACTTCATGTGTGCTTACCTTCAACAAGACAGAAGACAAGGCTACTGTATAGAATGTCACTGGACTTTGCTCCTGTGTTGAAGCATATTCCTTTCATGCACTATCTCTGGAGACATTTTGCAGAACAGGTGTTGAATGAGGACTTAAGGCTGGTGATTGGTCAGCAAGAAAGAATGCTTAACGGAGCAAATATTTGGAACATGCCAGTTTCTTATGATAAGCTAGGTGTAAGATATAGGGTATGGAGAAATGCAGTAGAGGAAGGAGCAAAACAACTACCCTTCAGCAAATCAAATTGA 1611 43.95 MTVVATAAALSLLPISFSRTPKLNFKKSVKGGFRVFAVFGDEGAIERKSGWETLFDVEDPRTKVPQSKGKFIDVNQALEVARNDIQYCDWRARQDVLAIMLLHEKVVEVLNPLARDYKSIGTMKKELSGLQGELAEAHRQVHISEARVSTALDKLAYMEELVHDRLLQDRNTAELDSPSTSPGPSTQSHDSVNSSLPPKKSLNVSGPVEPYHPRLKNFWYPVAFSSDLKDDTMVPFDCFEESWVLFRGKDGNPGCIRNTCAHRACPLDLGTVNDGRVQCPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCFEKEGMIWVWPGNDPPAADLPSLQPPSGFQIHAELVIEIPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCIVLSTIGISKPGKLEGQSTRECSTHLHQLHVCLPSTRQKTRLLYRMSLDFAPVLKHIPFMHYLWRHFAEQVLNEDLRLVIGQQERMLNGANIWNMPVSYDKLGVRYRVWRNAVEEGAKQLPFSKSN 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 65606659 65610117 - Hsped.02g22680.1 Hepe02g2268 563769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2268 536 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 260 282 IPR015881 GO:0005506(InterPro)|GO:0051537(InterPro)
Hepe02g2268 536 Gene3D - 341 530 - -
Hepe02g2268 536 Pfam Pheophorbide a oxygenase 406 500 IPR013626 GO:0010277(InterPro)
Hepe02g2268 536 SUPERFAMILY Bet v1-like 315 522 - -
Hepe02g2268 536 Pfam Rieske [2Fe-2S] domain 219 300 IPR017941 GO:0051537(InterPro)
Hepe02g2268 536 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 219 319 IPR017941 GO:0051537(InterPro)
Hepe02g2268 536 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 104 525 IPR050584 GO:0005737(PANTHER)|GO:0016491(PANTHER)
Hepe02g2268 536 SUPERFAMILY ISP domain 213 327 IPR036922 GO:0051537(InterPro)
Hepe02g2268 536 MobiDBLite consensus disorder prediction 172 207 - -
Hepe02g2268 536 Gene3D - 213 335 IPR036922 GO:0051537(InterPro)
Hepe02g2268 536 CDD Rieske_RO_Alpha_Cao 202 328 - -
Hepe02g2268 536 MobiDBLite consensus disorder prediction 172 201 - -
Hepe02g2268 536 Coils Coil 120 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2268 K13600 - - csv:101205768 1018.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41