Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2278 ATGCTCCAACGAGGAATTGAGCGCGACAAGACCCGGATACAGAATTTCAATAAGATGACCATGAGTAACTTCGATGTTCAAATGCCTGTTGTTGAGAGAAAGGGGAGCTATCTGATGAACTTGTCACTCGGGACGCCTCCAGTTTTGTTCTCTGCCATTGTCGATACTGGCAGCGACTTGATTTGGACACAGTGCAAGCCATGCTTGCAATGCTTTGAGCAGCCAACCCCTGTGTATGACCCAACACAATCGTCTTCCTTCGCCAACGCCACCCCTGCATTATGCAAGGCTTTGACCAATTCTAGTTCCAGCAATGGTTGTGAGTACCATATGGTTATGGAGACTGGTCTTCGACCAATAGGCTTGAAACAGGGTGCTGGCATAGTGGGGCTCAGCCGAGGATCATTGTTGCTTCTCTCGCAGCTCAATATTCACAAATTTTCTTACTGTTTGACTCCAAATGGAACTGGGAGTCTGACCTTTGGATCTATGACAAGTATCATCAACACTACGAACCGAGCCATCAAGGGCACGCCATTGATACAAAATCCATTTGAGCCATCTTTCTACTATCTATCTCTTCAAGGAATCACAGTAGGCCGAAAGTTCTTGCCCATCCCGCCCTCGTGGTTTAGATTAAACACCGATGGCAGCGGTGGCGTGATCATAGATTCTGGCACATCAATTACCTACTTAACGGAGGATGCTTTTGATGTGCTGAAGCCATTTTTCACTGCCCAGACAAACCTCCCAGTGAAACATTCAGCCGTTATCGGTCTTGATCTCTGCTTTGAGCTGCCTTCCCACAACAAAAGTAAACTTGATGTGCCTGATTTGGTATTACATTTTGAGGGGCTTGACTTGAAGCTTCCAGTTGAGAACTATATGGTCACTGATGAGGAGCTGGGGTTGGTGTGCTTGGCAATGGGAGCTGCAGGAGGTTTCTCAATTTTCGGCAGTATGCAACATCAGAATATGTTGGTTCTTCATGATCTCGAGAAGGAAGTCATATCATTTGTTCCCACACAATGTGCTCGGCTCACATACTAG 1050 46.48 MLQRGIERDKTRIQNFNKMTMSNFDVQMPVVERKGSYLMNLSLGTPPVLFSAIVDTGSDLIWTQCKPCLQCFEQPTPVYDPTQSSSFANATPALCKALTNSSSSNGCEYHMVMETGLRPIGLKQGAGIVGLSRGSLLLLSQLNIHKFSYCLTPNGTGSLTFGSMTSIINTTNRAIKGTPLIQNPFEPSFYYLSLQGITVGRKFLPIPPSWFRLNTDGSGGVIIDSGTSITYLTEDAFDVLKPFFTAQTNLPVKHSAVIGLDLCFELPSHNKSKLDVPDLVLHFEGLDLKLPVENYMVTDEELGLVCLAMGAAGGFSIFGSMQHQNMLVLHDLEKEVISFVPTQCARLTY 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 65800703 65801849 - Hsped.02g22780.1 Hepe02g2278 563779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2278 349 CDD pepsin_A_like_plant 37 344 IPR034161 -
Hepe02g2278 349 FunFam Aspartyl protease family protein 168 347 - -
Hepe02g2278 349 Gene3D Acid Proteases 164 349 IPR021109 -
Hepe02g2278 349 ProSiteProfiles Peptidase family A1 domain profile. 37 340 IPR033121 -
Hepe02g2278 349 Pfam Xylanase inhibitor N-terminal 37 110 IPR032861 -
Hepe02g2278 349 PRINTS Pepsin (A1) aspartic protease family signature 43 63 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe02g2278 349 PRINTS Pepsin (A1) aspartic protease family signature 221 232 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe02g2278 349 Gene3D Acid Proteases 118 163 IPR021109 -
Hepe02g2278 349 Gene3D Acid Proteases 13 117 IPR021109 -
Hepe02g2278 349 PANTHER OS07G0603500 PROTEIN-RELATED 124 341 IPR051708 GO:0005576(PANTHER)
Hepe02g2278 349 SUPERFAMILY Acid proteases 34 347 IPR021109 -
Hepe02g2278 349 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 221 232 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe02g2278 349 Pfam Xylanase inhibitor C-terminal 190 340 IPR032799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2278 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2278 Hepe-Chr2:65800703 Hepe03g0668 Hepe-Chr3:15313369 7.13e-54 dispersed
Hepe02g2278 Hepe-Chr2:65800703 Hepe04g0236 Hepe-Chr4:44889211 2.53e-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g279 . . . . . . . . . . . . . . . . . Bhi04g01921 . . . Hepe02g2278 . Lcy10g1220 Cla08g01171 Cam08g1635 Cec08g1208 Cco08g1331 Clacu08g1331 . Cre08g1117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01032 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002918 1 2 1 2 1 2 1 2 2 2 2 2 1 1 2 2 2 2 1 2 1 2 2 2 5 2 1 1 2 1 52