Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2393 ATGAAGATGAAGCCTAAGAGGGAGCTTGAGGATGATAGATCTAGTGGCGGCGGCGGCGGCGGCGGCGGAAGAGGGGTTGTGAAAGGTGGGTGTTCTAATTCAATGTCGAGTGGGAATGGGAAGGTGAAGATGTGGGAGGAGGAGGAGCAAGACGGCGGCGGAATGGATGAGCTGCTTGCTGTTTTGGGGTACAAGGTTCGAGCATCGGACATGGCGGATGTGGCTCAGAAGCTGGAGCAGTTGGAGATGGTGATGGGAAGTGCTCATGAAGATGGGATTTCTCATCTTGCTTCTGATACTGTTCATTATAATCCTTCTGATCTTTCTTCTTGGGTTCAAAATATGATCTCTGAATGCAATCATTCCATTTCCCCCAACCATTTCAACTCTCATCCCCGGATTCAATACCACGATGATTCTCAGTACGATCTCAGCGCCATTCCTGGCGTCGCGCTTCTGCCTCCCCCCAAAGATTCCGACGCACTAATTCAAACTAATTCTCGTAAGCGATTGAAGATTGATGGAGGACAGAGTTCCGTTAATTTGTTGCCGGAGCCCAGGGTTGTCTCTGAACCTTCTCGCCCGGTCGTGGTTGTGCAAGAGACCGGGATTCAACTCGTTCATACTCTAATGGCTTGCGCCGAAGCCGTGCAACAAGAGAATATGAAGCTCGCCGATGCCTTGGTCAAGCACATCGGATTACTTGCGGCGTCGCAAGCCGGAGCGATGAGGAAAGTCGCCACGTATTTCGCCGAAGCCCTAGCTCGTCGGATTTACAGAATCTACTCTCCTCAAGACGGACTCTACTCCGATCTCCTCCAGATGCACTTCTACGAGACCTGTCCCTATCTCAAATTCGCGCATTTCACTGCCAATCAAGCTATTCTCGAAGCATTCGCGACGGCGACCAGAGTTCATGTTATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTGATGCAGGCGCTCGCAGTACGGCCTGGAGGTCCGCCGGCGTTTCGATTGACTGCAATCGGCCCGCCGCAGCCGGAAAATTCGACCGATTCGTTGCAGGAAGTCGGTTGGAAGTTGGCGCAGATGGCGGAGGCCATTGGTGTTGATTTCGAGTTCGAGTTTGAGTTCAATCACATCGTGTGTAGTAATCTGGCTGATCTCGATCCGGCGGCTTTGGAGATTCGGGAGGCGGCGGTGGAGGCGGTGGCGGTGAACTCGGTGTTCGATCTGCACCGGTTGTTGGCTCGGCCTGGAGCGATCGAGAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATAGTGACGATTGTGGAACAAGAAGCGAACCACAACGGACCGGTTTTCTTGGACCGGTTCACCGAGGCGTTGCATTATTACTCGAACCTGTTTGACTCGCTGGAGGGTTCGTCCACCGGGTTCGAACCGGCGAGTGAGGACGTGTTGTTGTCGGAGGTTTATTTGGGGAGGCAGATTTGTAATGTGGTGGCGTGTGAAGGAACGGACCGAGTCGAGCGGCACGAGTCACTGACTCAGTGGCGAACTCGGATGGAATCGGCCGGTTTTGAAGCGGTTCATCTCGGTTCAAACGCGTTCAAGCAGGCTAGCATGCTTTTGGCCTTATTTGCTGGCGGAGAAGGGTACAGGGTGGAGGAGAATAATGGGTGTTTGATGCTCGGTTGGCACACTCGACCGTTGATTGCCACGTCAGCATGGCAGCTCGCTGCCGGTGAGTCGACTCAGTGA 1746 53.44 MKMKPKRELEDDRSSGGGGGGGGRGVVKGGCSNSMSSGNGKVKMWEEEEQDGGGMDELLAVLGYKVRASDMADVAQKLEQLEMVMGSAHEDGISHLASDTVHYNPSDLSSWVQNMISECNHSISPNHFNSHPRIQYHDDSQYDLSAIPGVALLPPPKDSDALIQTNSRKRLKIDGGQSSVNLLPEPRVVSEPSRPVVVVQETGIQLVHTLMACAEAVQQENMKLADALVKHIGLLAASQAGAMRKVATYFAEALARRIYRIYSPQDGLYSDLLQMHFYETCPYLKFAHFTANQAILEAFATATRVHVIDFSLNQGMQWPALMQALAVRPGGPPAFRLTAIGPPQPENSTDSLQEVGWKLAQMAEAIGVDFEFEFEFNHIVCSNLADLDPAALEIREAAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSTGFEPASEDVLLSEVYLGRQICNVVACEGTDRVERHESLTQWRTRMESAGFEAVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAAGESTQ 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 69235915 69237660 - Hsped.02g23930.1 Hepe02g2393 563894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2393 581 ProSiteProfiles GRAS family profile. 197 573 IPR005202 -
Hepe02g2393 581 FunFam DELLA protein GAI 54 119 - -
Hepe02g2393 581 SMART DELLA_2 56 129 - -
Hepe02g2393 581 Gene3D - 54 119 IPR038088 -
Hepe02g2393 581 Pfam GRAS domain family 206 573 IPR005202 -
Hepe02g2393 581 Pfam Transcriptional regulator DELLA protein N terminal 56 122 IPR021914 -
Hepe02g2393 581 MobiDBLite consensus disorder prediction 1 39 - -
Hepe02g2393 581 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 177 572 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0993 Hepe-Chr2:12105253 Hepe02g2393 Hepe-Chr2:69235915 2.48e-225 dispersed
Hepe02g2393 Hepe-Chr2:69235915 Hepe02g2646 Hepe-Chr2:73957125 7.21e-230 dispersed
Hepe02g2393 Hepe-Chr2:69235915 Hepe04g0646 Hepe-Chr4:59714816 3.58e-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55088 PF03514 GRAS 1.40E-132 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2393 K14494 - csv:101213911 888.256