Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2407 ATGGCGCGCCGGAATCCACTCCGGCTGTTTTTTTCATCTCCCGTGCTTCTGCTTGTTCTTTTGATGTTCTTTACTGCAGGAGAGGCGGATCTTTCATCCGACACGGCGGCGCTGCTGGCCCTTCAGAAGGCCATGGGTCGTCTGAGCCGGACTCGCCACTGGAACCTCTCCGATGACACTCCGTGTTCCTGGCTTGGCGTTACTTGCGGCGGCGGGAGGGTTATCGAACTGCGGCTTCCCGGCGTTGGACTCGTCGGTCAACTTCCTTTAGGGCTTGGGAATTTGACTCAGCTTCAAACCCTTTCTCTTCGCTCTAACATGCTTTCCGGTTCTATTCCTTCTGATTTTGCAAATCTCCGCTCCCTTCGGAACCTCTACTTGCAACGGAACTCGTTTTCCGGCGAGATTCCTCAGGTTCTGTTCGGTATTCGGAGTCTGGTTCGCCTGAATTTGGCGCACAACGAGTTCATCGGTCCGATTTCATCTGGATTCAACAATCTTACGAACTTAGAGGCTCTCAATTTGGAACAAAATCAACTCGCTGGATTTATTCCTGATTTGAACATTCCCTCGCTCAAGACCATCGATGTTTCTTTCAATCGTCTCAACGGCTCAATCCCTAAGCGGTTTTCCAATCAACCAGCCAGCGCCTTCGACGGGAACTCCCTCTGCGGGAAGCCACTGAGCCCCTGCGACGGCGAGGAGAAGAAATTATCAGCTGGAGCAATCGCCGGAATCGTTATCGGAAGTTTGATTGCATTCTTGATCATTGTTCTGATTGTGATCATCTTGTGCCGAAAGAAGATCCGGACTGATCGGACGAGTGATGCTCAGACGACGACCTCCGAGAGATTGTCGTCGGAGGTCGAGAATGCGGGCGGCGGAAGTGGAGGAATTGAGAATGAGAGGAATCTGGTGTTCTGTGGGAAAGGAGAAAGTGGGTTTGATTTGGAGGAACTGTTGAAAGCTTCTGCAGAAGTGTTGGGGAAGGGGACTTTTGGGTCAACTTACAAGGCAGTTCTGGATGTGGGGATGATGACTGTGGTGGTTAAGAGGTTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATGAGAATTTAGTTCCTATTAAAGCTTACTATTATGGCAGAGATGAGAAGCTTCTGATATGTGATTATGTCTCCATGGGAAGCTTATCTGTACTTTTACATGGCAACAAAGATCCGGGTAGGAGGACTCCATTGAAATGGGATGCAAGGGCTGGCATTGCACTCGCATCTGCTCGTGGGATTTCGTATCTACATTCTCGACGACCTCCAACCTCCCATGGCAATATAAAGTCTTCAAACATTCTCCTTGACAGATCCCACACAGCTTGTGTCTCTGACTTTGGCCTCATTCAGATTGCTAGCCCTACATCCACTCCAAACCATGTTGCAGCCTACTGCGCCCCCGAAGTTACCGATCCTCGAAAAGTATCCCTGAAAGCAGATGTTTACAGTTTTGGTGTGGTAGTTCTAGAGCTTCTAACAGGGAAGGCTCCGAACTCGCCAATGCTAAACGACGATGGCATAGACCTCCCACGATGGGTGCACTCGAAGATCGAAGAGAAGAAGACTGCAGAAGTGTTTGATGAGGAGCTGTTAGAATACAAGAATGGCTTGGATGAAATGGTTCATCTTCTACATCTTGCCATGTTGTGTACAGCTCCACACCCGGATAGTCGCCCTTCGATGGCAAAGGTGACGAGTCGAATCGATGAAATATATAGTTCGATCTTACTGAAAGAACAAGAGACCAGCAACGATAAGTTTTATGATGTGGACAGTACTATTTCTCAGCAATTTTACTCGGCTGATTCAATCATGGTTCCACTTCCACCTTCAATCTAG 1905 48.5 MARRNPLRLFFSSPVLLLVLLMFFTAGEADLSSDTAALLALQKAMGRLSRTRHWNLSDDTPCSWLGVTCGGGRVIELRLPGVGLVGQLPLGLGNLTQLQTLSLRSNMLSGSIPSDFANLRSLRNLYLQRNSFSGEIPQVLFGIRSLVRLNLAHNEFIGPISSGFNNLTNLEALNLEQNQLAGFIPDLNIPSLKTIDVSFNRLNGSIPKRFSNQPASAFDGNSLCGKPLSPCDGEEKKLSAGAIAGIVIGSLIAFLIIVLIVIILCRKKIRTDRTSDAQTTTSERLSSEVENAGGGSGGIENERNLVFCGKGESGFDLEELLKASAEVLGKGTFGSTYKAVLDVGMMTVVVKRLRDVKVSEEEFKEKIESLGMMNHENLVPIKAYYYGRDEKLLICDYVSMGSLSVLLHGNKDPGRRTPLKWDARAGIALASARGISYLHSRRPPTSHGNIKSSNILLDRSHTACVSDFGLIQIASPTSTPNHVAAYCAPEVTDPRKVSLKADVYSFGVVVLELLTGKAPNSPMLNDDGIDLPRWVHSKIEEKKTAEVFDEELLEYKNGLDEMVHLLHLAMLCTAPHPDSRPSMAKVTSRIDEIYSSILLKEQETSNDKFYDVDSTISQQFYSADSIMVPLPPSI 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 69734346 69737523 - Hsped.02g24070.1 Hepe02g2407 563908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2407 634 FunFam pollen receptor-like kinase 1 292 397 - -
Hepe02g2407 634 ProSitePatterns Protein kinases ATP-binding region signature. 328 351 IPR017441 GO:0005524(InterPro)
Hepe02g2407 634 Gene3D Transferase(Phosphotransferase) domain 1 398 605 - -
Hepe02g2407 634 SUPERFAMILY Protein kinase-like (PK-like) 326 588 IPR011009 -
Hepe02g2407 634 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
Hepe02g2407 634 Gene3D Ribonuclease Inhibitor 188 235 IPR032675 -
Hepe02g2407 634 MobiDBLite consensus disorder prediction 275 296 - -
Hepe02g2407 634 Gene3D Phosphorylase Kinase; domain 1 299 397 - -
Hepe02g2407 634 ProSiteProfiles Protein kinase domain profile. 322 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2407 634 SUPERFAMILY L domain-like 50 212 - -
Hepe02g2407 634 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 398 604 - -
Hepe02g2407 634 PANTHER OS05G0588300 PROTEIN 16 600 IPR050994 -
Hepe02g2407 634 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Hepe02g2407 634 Pfam Protein tyrosine and serine/threonine kinase 326 589 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g2407 634 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515(InterPro)
Hepe02g2407 634 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515(InterPro)
Hepe02g2407 634 Pfam Leucine Rich Repeat 121 140 IPR001611 GO:0005515(InterPro)
Hepe02g2407 634 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Hepe02g2407 634 FunFam Probable inactive receptor kinase RLK902 31 188 - -
Hepe02g2407 634 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1001 Hepe-Chr2:12270237 Hepe02g2407 Hepe-Chr2:69734346 7.88e-163 dispersed
Hepe02g2407 Hepe-Chr2:69734346 Hepe08g2570 Hepe-Chr8:67362052 1.44e-120 dispersed
Hepe02g2407 Hepe-Chr2:69734346 Hepe07g2340 Hepe-Chr7:67769684 2.25e-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72588 PF07714 PK_Tyr_Ser-Thr 2.30E-34 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2407 - - - 0.0