Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2410 ATGGTTTTATCCAAGACTTCTTCTCATTCAGATGTCTCCGTCCACTCCACCTTCGCGTCTCGATATGTGCGAACATCTCTCCCGAGATTCAAAATGCCGGAGAATTCGATCCCCAAGGAGGCTGCGTTCCAGATCATCAATGACGAACTCATGCTCGATGGAAACCCTAGGCTCAATTTGGCCTCCTTCGTCACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCCATTAACAAGAACTACGTCGATATGGATGAGTATCCTGTCACTACAGAGCTCCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCGCCATTGGGTGATGCTGAGACTGCAGTGGGAGTTGGAACAGTGGGTTCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAATGGCAGAACAGAAGGAAGGCTGAAGGCAAGCCCTATGACAATCCCAACATTGTCACTGGAGCTAATGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAGTTGAAGGAGGTGAAACTGAGGGAAGGTTACTATGTGATGGATCCAACGAAAGCTGTGGAGTTGGTTGATGAGAACACCATTTGTGTTGCAGCCATTTTGGGTTCCACCCTCAATGGAGAATTCGAAGATGTAAAGCTCTTAAATGATCTCCTAGTCGAGAAGAACAGCCAAACAGGATGGGACACTCCTATTCATGTTGATGCTGCAAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGAGCTTGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTCAGTGGCCACAAATATGGGCTTGTTTATGCTGGAATTGGGTGGGTCATCTGGAGGAACAAGGAAGACTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCTGACCAACCCACTTTCACACTCAATTTCTCCAAAGGTACCCTACCCTACATTTCTAATCTCTCTGTTCAACATTCTTTTCTTTTCAAGATGACTTTGAAGATCACTTTTGAGTTTTTATTAACTGCAGGTTCTAGTCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCCGAGAAAACATGATCGTTCTAAAGGAAGGACTCGAGAAAACAGAGCGGTTCGACATCGTGTCGAAGGACAATGGAGTTCCACTAGTGGCCTTCTCCCTGAAAGACAGCACACGCCATAATGAGTTTGAGGTTTCGGAAATGCTGAGGAGATTCGGGTGGATTGTGCCGGCTTACACCATGCCTCCAGATGCACAACACATAACAGTTCTAAGAGTAGTGATCCGAGAAGATTTTTCACGCACACTTGCTGAGCGTTTGGTGAAAGATATTGGAAAAGTGATGCACGAGCTCGACGTTCTCCCGTCGAGGGCTGATTTCAAGACCATCGTGGCCGACGACGCGGTGGTGGCGAAGAAGAGTGAACTCGAGACGCAGAGGGAGATCACAACTGCATGGAGGAAGTTTGTGATGGATAAGAAGAAGACCAATGGAGTTTGTTAG 1575 46.54 MVLSKTSSHSDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDAETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPTKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNSQTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGTLPYISNLSVQHSFLFKMTLKITFEFLLTAGSSQVIAQYYQLIRLGYEGYQNVMENCRENMIVLKEGLEKTERFDIVSKDNGVPLVAFSLKDSTRHNEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVKDIGKVMHELDVLPSRADFKTIVADDAVVAKKSELETQREITTAWRKFVMDKKKTNGVC 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 69824793 69832077 - Hsped.02g24100.1 Hepe02g2410 563911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2410 524 FunFam Glutamate decarboxylase 392 479 - -
Hepe02g2410 524 Gene3D - 1 65 - -
Hepe02g2410 524 Gene3D - 66 391 IPR015421 -
Hepe02g2410 524 FunFam Glutamate decarboxylase 1 65 - -
Hepe02g2410 524 Pfam Pyridoxal-dependent decarboxylase conserved domain 344 412 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Hepe02g2410 524 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 321 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Hepe02g2410 524 FunFam Glutamate decarboxylase 66 343 - -
Hepe02g2410 524 NCBIfam glutamate decarboxylase 16 323 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Hepe02g2410 524 SUPERFAMILY PLP-dependent transferases 15 475 IPR015424 -
Hepe02g2410 524 Gene3D - 392 479 - -
Hepe02g2410 524 PANTHER GLUTAMATE DECARBOXYLASE 1 326 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2410 Hepe-Chr2:69824793 Hepe02g2579 Hepe-Chr2:72776323 3.00e-295 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2410 K01580 - csv:101216119 920.613