Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2415 ATGTCACTTCACTTCCTCTTCACAGTTGCAGCAGCTCTCCTCACATCTCCAGTCACCTCCCATTTCTCTTCTTCAACCTCCTCCCCCTCGCCGGATTTCTCCCCGTCGCTCTCCGACTGGAGATCTGCTCGGGCCACCTACTACGCCGCCTCCGATCCTCGCGATGCCGTCGGCGGAGCCTGTGGATATGGCGATTTAGTGAAGGCAGGTTATGGCATGGCCACGGTCGGACTCAGCGAGGCTCTTTACGAACGCGGCCAGATCTGTGGCGCCTGCTTTCAGCTCCGTTGCGTTGAGGACCTCCGGTGGTGTATTCCTGGCACCTCCATCATTGTCACTGTTACGAATTTCTGTGCGCCTAATTATGGCTTCACGGCTGAAGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAAGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTATTCAGTATCGGAGGATCAAATGCCGAAAGGAGGGGGGCATTCGATATACGATTTCTGGGTACGGCATCTACCTCTCAGTGTTGATAAGTAACGTTGCAGGTGCTGGGGATGTCAGTGCTGTGAAGATCAAGGGCTCGAGAACCGGTTGGCTTCCGATGGGTCGAAATTGGGGGCAAAACTGGCACATTAATGCTGATTTTAACAATCAGCCCGTTTCCTTTGAAGTCACTAGCAGTGATGGAGTAACAATTACATCCTACAATGTTGCTCCAAAGAATTGGAACTTTGGACAGACTTTTGAAGGCAAACAATTTGAATCTTGA 798 51.25 MSLHFLFTVAAALLTSPVTSHFSSSTSSPSPDFSPSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSEALYERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPIQYRRIKCRKEGGIRYTISGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLPMGRNWGQNWHINADFNNQPVSFEVTSSDGVTITSYNVAPKNWNFGQTFEGKQFES 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 69998780 70002436 + Hsped.02g24150.1 Hepe02g2415 563916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2415 265 PRINTS Expansin signature 110 120 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 PRINTS Expansin signature 246 262 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 PRINTS Expansin signature 97 108 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 PRINTS Expansin signature 129 146 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 PRINTS Expansin signature 170 182 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 PRINTS Expansin signature 70 84 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 PRINTS Expansin signature 217 238 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 PRINTS Expansin signature 182 203 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 PRINTS Expansin signature 146 159 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 PANTHER EXPANSIN-A15 17 263 IPR002963 GO:0009664(InterPro)
Hepe02g2415 265 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Hepe02g2415 265 SUPERFAMILY Barwin-like endoglucanases 39 189 IPR036908 -
Hepe02g2415 265 Gene3D - 173 263 IPR036749 -
Hepe02g2415 265 CDD DPBB_EXPA_N 39 166 - -
Hepe02g2415 265 Gene3D - 25 167 IPR036908 -
Hepe02g2415 265 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576(InterPro)
Hepe02g2415 265 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576(InterPro)
Hepe02g2415 265 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576(InterPro)
Hepe02g2415 265 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Hepe02g2415 265 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576(InterPro)
Hepe02g2415 265 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Hepe02g2415 265 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Hepe02g2415 265 SMART dpbb_1 75 161 IPR007112 -
Hepe02g2415 265 Pfam Lytic transglycolase 76 161 IPR009009 -
Hepe02g2415 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Hepe02g2415 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2415 Hepe-Chr2:69998780 Hepe10g1755 Hepe-Chr10:54338219 4.32e-89 dispersed
Hepe02g2415 Hepe-Chr2:69998780 Hepe10g1240 Hepe-Chr10:47669621 6.22e-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2415 - - - 0.0