Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2436 ATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTTTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAACAAAGAAGTTGATGGGCATATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACGATGCATGCAGATGTGGAAACGGATGAAGTATATGCACAGATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCAAGTAGACAGCCAACCAATTACTTTTGCAAGACGTTGACAGCAAGTGATACAAGCACTCATGGAGGATTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCCCCACTGGATTTTTCACTACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATATCGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGGCATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACAAATAGCTGTTTTACAGTTTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTCCGGATGCTTTTTGAAACTGAAGAGTCCAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGTTGGTCAAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTTTCGTTGTGGGAAATTGAGCCTTTAACTACATTTCCTATGTATCCATCTCTGTTTCCACTTAGGCTGAAACGTCCATGGCATCCTGGAGTCTCTTCTGTTCATGATAACAGAGATGATGCATCTAATGGCTTAATGTGGCTTCGGGGAGGAGTTGGGGAACAGGGTTTACACTCACTGAATTTGCAATCCGTGGGCTCACTGCCCTGGTTGCAGCAGAGACTTGATTCTTCCATGTTTGGAAATGACCATAATCAACAGTATCAAGCCATGTTGGCTGCTGGAATGCCGAACCTTGGAGGTGTCGATATGCTGAGACAGCAAATTATGCATCTTCAACAGCCTTTCCAATATATTCAACAGGCAGGCTTCCAAAATTCTTTCTTGCAGCTGCAACAGCAACAACAGCAACAGCAGCAGCAGCAGCATCAACAACAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTGCAGGCACCAAGCCAGGTAATGGCAGAAAATCTACCCCAACACCTCCTCCAGCAAACCCTACAAAATCAACCGGAGGATCTGCCAAACCAGCAACAGCATGCTTATCATGATACCCTTCAGGTTCAAAGCAATCAATTTCATCAGGGTGGGCATTCAAATGTGCCATCACCCACATTTCCCAGAACAGACCTTATGGATTCCAACACAAATTACTCGGAATCCATTACCTCTAGAAGAAATATACTTGCTTCATCATGTGCTGAAGGGACTGGAAATCTCTCCAATATCTATAGAAGTGGGCAGTCAATCCTAACTGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACAGGTTGATACCCACCCGAACTCAATGTCCTTTCCACCATTTTCTGGTAGAGACTCAATTTTGGAGCTGGGAAATTGTAATTCAGATTCCCCAAGTCCTACACTTTTTGGTGTTAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTACGCTTCTCCTTCAATTGGTCCTGATTCATCTTCAATGCCACTGGGAGATTCTGGATTTCAGAATTCTCTGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAGCTCGGGGCAAGTTGATCCATCGAATCCAACTCGGACATTTGTGAAGGTTTACAAATCCGGATCTGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTTAATAATGTCTGGTATATCAAGATACTTTCTCCCCAGGATTTTCAGAAACTAGGGGAACAGGCAATCGAGTCCTTCAACCCTATCGTTGGTCAGCGACTATCCAGTGGTGGCAATGAAGCTGAGAATGTTTCGGGGCTACCGTCTGTTGGTTCGCTAGAATATTGA 2571 45.82 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGEQGLHSLNLQSVGSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQQAGFQNSFLQLQQQQQQQQQQQHQQQQQLVQQSMPQNILQAPSQVMAENLPQHLLQQTLQNQPEDLPNQQQHAYHDTLQVQSNQFHQGGHSNVPSPTFPRTDLMDSNTNYSESITSRRNILASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHSQVDTHPNSMSFPPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPLGDSGFQNSLYSCVQDSSELLHSSGQVDPSNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGEQAIESFNPIVGQRLSSGGNEAENVSGLPSVGSLEY 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 70453552 70479333 + Hsped.02g24360.1 Hepe02g2436 563937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2436 856 Gene3D - 727 820 - -
Hepe02g2436 856 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Hepe02g2436 856 Gene3D - 292 364 - -
Hepe02g2436 856 Gene3D - 126 230 IPR015300 -
Hepe02g2436 856 ProSiteProfiles PB1 domain profile. 731 816 IPR053793 -
Hepe02g2436 856 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 822 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe02g2436 856 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Hepe02g2436 856 MobiDBLite consensus disorder prediction 837 856 - -
Hepe02g2436 856 FunFam Auxin response factor 126 230 - -
Hepe02g2436 856 Coils Coil 480 500 - -
Hepe02g2436 856 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677(InterPro)
Hepe02g2436 856 SUPERFAMILY CAD & PB1 domains 723 805 - -
Hepe02g2436 856 FunFam Auxin response factor 726 820 - -
Hepe02g2436 856 Pfam AUX/IAA family 727 817 IPR033389 -
Hepe02g2436 856 CDD B3_DNA 127 228 IPR003340 GO:0003677(InterPro)
Hepe02g2436 856 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe02g2436 856 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Hepe02g2436 856 FunFam Auxin response factor 292 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2436 Hepe-Chr2:70453552 Hepe07g1742 Hepe-Chr7:59763079 9.20e-314 dispersed
Hepe02g2436 Hepe-Chr2:70453552 Hepe04g2022 Hepe-Chr4:75005464 0.0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55093 PF02309 AUX_IAA 3.80E-08 CL0072 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2436 K14486 - csv:101208098 1633.62