Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2440 ATGTCCATCATCGACCGAGATGTCAATCGCCTCGCCTCCGATGATCTTGCCGCCGCCGTCCCCGGCTTCGGACGCGGCGGTGTTCATCGCAAGAAGAGGATGGCTAGACAACGTCGCTCTTCTTCTAATCTTCACTTCTCTTTTTCTTCTTCTTCTTCCACTGCTCTCGTCCCTCTCCCACGGGTAATTGATCCAAGGAGGTTGAAGTTTCTTTTTCAGAAGGAGCTCAAGAACAGTGATGTTAGCTCTCTTAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTTCCAGCTTTGGAGTCTAAAGAAGGAATCATCATCACCATGGATGACATGGATGGGGTGCATGTTTGGAACTTTAAATACAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACCGGGGACTTTGTCAATGCCCATGGATTACAAGTAGGAGATTTCATCATGGTTTACCAAGATTATGAAGAACAAAACTATGTGATTCAAGCAAAAAAGGCTTCGGAGCAAGAAATATATTCCGACATAGCGAATAACATCGTGATCAACGACATTGTCTTTGAAGATCACTTCGATGCTAACAAAGCGGCGAGCTCCATATACGTGCCTAGTCCAAACATGGACGATCCGGTGTCGTCATTCATCTACGACACGAGTTCTGCCTTTGACAACGATTCACCCTTCGATTTTATGAGTGGATCAATGACCAACTACTCGAGAATGGGAGCTCTCGAAGGTTTCGGATCGGTCGAGAACTTGTCGCTCGATGACTTCTACTAA 798 45.11 MSIIDRDVNRLASDDLAAAVPGFGRGGVHRKKRMARQRRSSSNLHFSFSSSSSTALVPLPRVIDPRRLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGIIITMDDMDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLQVGDFIMVYQDYEEQNYVIQAKKASEQEIYSDIANNIVINDIVFEDHFDANKAASSIYVPSPNMDDPVSSFIYDTSSAFDNDSPFDFMSGSMTNYSRMGALEGFGSVENLSLDDFY 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 70518481 70521961 + Hsped.02g24400.1 Hepe02g2440 563941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2440 265 CDD B3_DNA 70 172 IPR003340 GO:0003677(InterPro)
Hepe02g2440 265 Gene3D - 68 189 IPR015300 -
Hepe02g2440 265 ProSiteProfiles B3 DNA-binding domain profile. 72 174 IPR003340 GO:0003677(InterPro)
Hepe02g2440 265 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 173 IPR044800 GO:0003700(InterPro)
Hepe02g2440 265 SMART B3_2 72 174 IPR003340 GO:0003677(InterPro)
Hepe02g2440 265 SUPERFAMILY DNA-binding pseudobarrel domain 70 168 IPR015300 -
Hepe02g2440 265 FunFam B3 domain-containing transcription factor FUS3 68 182 - -
Hepe02g2440 265 Pfam B3 DNA binding domain 72 171 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2440 Hepe-Chr2:70518481 Hepe03g1262 Hepe-Chr3:67871458 3.58e-36 dispersed
Hepe02g2440 Hepe-Chr2:70518481 Hepe04g1819 Hepe-Chr4:73127000 1.09e-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55095 PF02362 B3 1.50E-18 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2440 K09287 - csv:101222512 396.356