Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2449 ATGTCTGGTTCCGATTGTGTCAACAACAACAATGGCGCCATAATCGAACTTCACCAAAACCAACTACAGAGCAATCAGACTAACAACAACAATGCTGCTCTGGTCCTCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGATGGCCGTGGCCGCCGTATTCGTATGCCCATCATTTGCGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATTATCGCCGCCACCGGCACCGGCACCACTCCCGCCACCTTCTCCACCATCGCCGCCTCCCTCCGCGGCGCTTCCTCTTCCTCTCTCGACCACAAGCCACTTCTCGCTCCCGCCCCCTTCATTCTCGGCAAGCGCCTAAGAACCGACGACGACGGACCTAACAAAGACGACGCCGCCACTGCCGCCATTTCCGTTGGCCACACTCTCGGTTCCATTATGGGTCCGGCTGCTTCCGGTGGCTACTGGGCGATTCCGGCCAGACCGGATTTCGGCCAGGTCTGGAGCTTTGCCGCCGCGGCTCCGGAGATGGTTTCTCATCAAGCGTCTCTGTTCGTTCAGCAACAATCAATGGGAGAGGCGTCGGCCGCCAAAGTGGGAAATTACCTTCCGGGGCATCTCAATTTGCTGGCTTCTTTATCAGGTGGACCCGGAAGTTCCGGCCGGAGAGACAACGACCACCGTTGA 738 58.94 MSGSDCVNNNNGAIIELHQNQLQSNQTNNNNAALVLKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFSTIAASLRGASSSSLDHKPLLAPAPFILGKRLRTDDDGPNKDDAATAAISVGHTLGSIMGPAASGGYWAIPARPDFGQVWSFAAAAPEMVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 70711405 70712856 + Hsped.02g24490.1 Hepe02g2449 563950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2449 245 ProSiteProfiles TCP domain profile. 41 95 IPR017887 -
Hepe02g2449 245 Pfam TCP family transcription factor 41 119 IPR017887 -
Hepe02g2449 245 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 35 177 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2449 K16221 - - csv:101214586 352.443
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2449 Hepe-Chr2:70711405 Hepe09g0125 Hepe-Chr9:998999 1.33e-34 dispersed
Hepe08g0907 Hepe-Chr8:8320332 Hepe02g2449 Hepe-Chr2:70711405 4.51e-26 transposed
Hepe01g0906 Hepe-Chr1:73300444 Hepe02g2449 Hepe-Chr2:70711405 2.36e-84 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2449 . 39 245 TCP Transcription Factor Family AT5G23280 65.2 1.6e-67 253.1
Hepe01g0906 . 114 332 TCP Transcription Factor Family AT5G23280 58.9 2.5e-60 229.2
Hepe03g0481 . 1 330 TCP Transcription Factor Family AT2G45680 50.1 5.0e-70 261.9
Hepe09g0125 . 35 174 TCP Transcription Factor Family AT3G47620 63.0 1.6e-42 171.0
Hepe07g2519 . 103 204 TCP Transcription Factor Family AT3G47620 82.4 3.7e-39 159.8
Hepe10g1486 . 143 234 TCP Transcription Factor Family AT3G47620 84.9 5.9e-37 152.5
Hepe09g0125 . 90 172 TCP Transcription Factor Family AT1G69690 95.2 1.0e-37 154.5
Hepe02g1690 . 42 305 TCP Transcription Factor Family AT3G27010 56.4 8.3e-61 231.1
Hepe03g1140 . 29 261 TCP Transcription Factor Family AT3G27010 52.6 3.7e-53 205.7
Hepe02g2449 . 9 244 TCP Transcription Factor Family AT5G08330 57.7 6.6e-66 247.7
Hepe01g0906 . 114 330 TCP Transcription Factor Family AT5G08330 57.9 6.1e-56 214.5
Hepe09g0277 . 29 123 TCP Transcription Factor Family AT5G60970 78.1 1.1e-37 154.5
Hepe02g0930 . 37 149 TCP Transcription Factor Family AT3G02150 67.5 7.3e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55097 PF03634 TCP 4.70E-32 No_clan Hepe TF