Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2498 ATGACAACCCAGCAACAGAATTCTGATTCAAATGCCGTCACAGGCTCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAATTGCAAGGCTGGGACTGGAGTCGGATGCCCACTGATTCAGAAACGCAACGCTGGAACTGGAAAAAGGATCAACAGCTCTCTGGCCCCCAGAAAAGGTTGGAGGATCTCTTGCGCCAGCCTGGTAATAAGTATTGTGCAGATTGTGGATCACCGGATCCAAAATGGGTATCACTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACAAGTCAATAATTTCATAAGCATGGGCGGAAACACAGATGTAAACAGGAAGTATGAAGCCGGCATCATGGATATGAACAGAAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTCGAATTTATAAGGAGAAAATATGAACTGCTGCAATTTTATAACGCCAACAGTCAAAGTTCTTGTGATAACAACGCATTGAGTAAAAGGAGTTCATTATGCTCTCAAAATAACTCTACAAACAAGAATGGTACCCAGGACAAAAGGCACTTTGAGAAACAAATTACTAGGTATCGCATTGGGCATGCATTTCGTAACAGCCGGGGAAGAAGAGATAGTGACCATAAGAGTTTTGACAAGAGCAGCCCTTCAGTCGCCAGACAAACATCGGCAGGTATGGTTGAATTTGTCGGGTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACCTAGCTGTTCGAGACGTGATGACCAGTGATCCCTATGTAATTCTCGGGTTGGGTCACCAATCGGTGAGGACTCGCGTCATAAAGAGCAACCTTAACCCAGTTTGGAACGAGAGCCTAATGTTGTCCATTCCCGAGCACATCCCTCCGCTAAAAGTGCTTGTCTATGATAAGGACACATTTTCCACTGATGACTTTATGGGCGACGCCGAAATCGACATTCAACCATTGGTCGCTGCTACGAAGGCTTACGAGAAGTCGACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCTAGTAATGAAAATACCTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTGAGACAGGATATATCTCTTAGATTGCAGAATGTGGAAAGAGGTATTCTTGAGATTGAGTTAGAATGCATTCCTCTCACTCAATAG 1239 43.34 MTTQQQNSDSNAVTGSCLFDLLFPDSELQGWDWSRMPTDSETQRWNWKKDQQLSGPQKRLEDLLRQPGNKYCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNNFISMGGNTDVNRKYEAGIMDMNRKPKPDSCIEERFEFIRRKYELLQFYNANSQSSCDNNALSKRSSLCSQNNSTNKNGTQDKRHFEKQITRYRIGHAFRNSRGRRDSDHKSFDKSSPSVARQTSAGMVEFVGLVKVNVVRGTNLAVRDVMTSDPYVILGLGHQSVRTRVIKSNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGDAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNENTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 71554621 71563818 - Hsped.02g24980.1 Hepe02g2498 563999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2498 412 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096(InterPro)
Hepe02g2498 412 Gene3D C2 domain 255 409 IPR035892 -
Hepe02g2498 412 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 47 412 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Hepe02g2498 412 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 254 412 - -
Hepe02g2498 412 MobiDBLite consensus disorder prediction 220 239 - -
Hepe02g2498 412 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 253 347 IPR035892 -
Hepe02g2498 412 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096(InterPro)
Hepe02g2498 412 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096(InterPro)
Hepe02g2498 412 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096(InterPro)
Hepe02g2498 412 SUPERFAMILY ArfGap/RecO-like zinc finger 57 173 IPR037278 -
Hepe02g2498 412 CDD C2_ArfGAP 255 399 - -
Hepe02g2498 412 SMART arf_gap_3 58 179 IPR001164 GO:0005096(InterPro)
Hepe02g2498 412 MobiDBLite consensus disorder prediction 220 244 - -
Hepe02g2498 412 ProSiteProfiles C2 domain profile. 239 354 IPR000008 -
Hepe02g2498 412 CDD ArfGap 60 166 - -
Hepe02g2498 412 Gene3D Arf GTPase activating protein 38 180 IPR038508 -
Hepe02g2498 412 SMART C2_3c 257 352 IPR000008 -
Hepe02g2498 412 Pfam C2 domain 257 345 IPR000008 -
Hepe02g2498 412 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 179 IPR001164 GO:0005096(InterPro)
Hepe02g2498 412 FunFam stromal membrane-associated protein 1 isoform X1 41 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0990 Hepe-Chr1:74520958 Hepe02g2498 Hepe-Chr2:71554621 7.21e-173 dispersed
Hepe02g0603 Hepe-Chr2:6261223 Hepe02g2498 Hepe-Chr2:71554621 5.85e-06 dispersed
Hepe02g2498 Hepe-Chr2:71554621 Hepe07g1714 Hepe-Chr7:58986660 1.17e-59 dispersed
Hepe02g3045 Hepe-Chr2:79603363 Hepe02g2498 Hepe-Chr2:71554621 6.90e-07 dispersed
Hepe02g2498 Hepe-Chr2:71554621 Hepe04g2050 Hepe-Chr4:75364914 9.78e-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2498 K12486 - csv:101215531 746.888