Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2500 ATGATGGCTTCTGGAAATCCTTATTTTGATGATATGAGGAGCAAACCAGAGCTAATTGATCCTCCCCAAAATGAAGAAATGATGGACATCAGGGAAACTGTGGAAGATCCAGCTCAAAATGAACTTAAACCTAATGTTGCCGTTTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCGGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCACACATTATGTTCTGGTTGCAAGCCTAGGGTGCACAATCGGTGCCCTACGTGTAGGCATGAACTTGGCAATATTAGATGTCTTGCATTGGAGAAGGTGGCCGCATCACTAGAACTACCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGTTGTCCATATGCTGGATCAGAATGTTCAATCGTTGGTGATATACCCTATTTGGTGACTCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTATGTAAAATCAAACCCTCAAGAAGTCGAAAACGCAACGTGGATGCTAACGGTTTTCAGTTGCTATGGTCAATACTTTTGCCTGCATTTCGAAGCTTTCCAGCTAGGGATGGCTCCAGTTTACATAGCTTTTTTGCGGTTCATGGGCGATGATAATGATGCGAAGAACTACAGCTATAGTCTTGAGGTGGGTGGAAATGGGAGGAAGATGGTATGGCAAGGGGTGCCAAGAAGCATCAGGGACAGCCATCGAAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAACATGGCTCTCTTCTTTTCCGGTGGAGACCGGAAAGAACTAAAGCTTAGGGTGACTGGTAGGATTTGGAAAGAACAGTGA 921 43.97 MMASGNPYFDDMRSKPELIDPPQNEEMMDIRETVEDPAQNELKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSIVGDIPYLVTHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCYGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 71600409 71603203 - Hsped.02g25000.1 Hepe02g2500 564001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2500 306 SUPERFAMILY RING/U-box 50 98 - -
Hepe02g2500 306 CDD RING-HC_SIAHs 56 94 - -
Hepe02g2500 306 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 58 93 IPR049548 -
Hepe02g2500 306 CDD Sina 172 300 - -
Hepe02g2500 306 Pfam Sina, TRAF-like domain 202 299 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Hepe02g2500 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 301 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Hepe02g2500 306 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Hepe02g2500 306 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270(InterPro)
Hepe02g2500 306 FunFam E3 ubiquitin-protein ligase SINAT3 110 166 - -
Hepe02g2500 306 SUPERFAMILY TRAF domain-like 111 303 - -
Hepe02g2500 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 167 299 - -
Hepe02g2500 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 110 IPR013083 -
Hepe02g2500 306 Pfam Sina, zinc finger 107 182 - -
Hepe02g2500 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 16 109 - -
Hepe02g2500 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 164 IPR013083 -
Hepe02g2500 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 299 IPR008974 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2500 K04506 - - csv:101220834 632.484
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0991 Hepe-Chr1:74533023 Hepe02g2500 Hepe-Chr2:71600409 6.24e-218 dispersed
Hepe02g2500 Hepe-Chr2:71600409 Hepe07g0062 Hepe-Chr7:572045 5.86e-169 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1932 . 85 571 C3H Transcription Factor Family AT2G31510 77.5 2.0e-234 808.5
Hepe08g1843 . 85 571 C3H Transcription Factor Family AT2G31510 77.3 5.7e-234 807.0
Hepe03g1020 . 73 561 C3H Transcription Factor Family AT2G31510 75.7 5.6e-229 790.4
Hepe03g1020 . 9 518 C3H Transcription Factor Family AT2G31770 57.0 1.1e-172 603.6
Hepe08g1843 . 54 545 C3H Transcription Factor Family AT2G31770 57.3 2.0e-171 599.4
Hepe08g1932 . 54 545 C3H Transcription Factor Family AT2G31770 57.3 2.0e-171 599.4
Hepe03g1020 . 56 525 C3H Transcription Factor Family AT2G31760 58.9 2.7e-170 595.5
Hepe08g1843 . 68 530 C3H Transcription Factor Family AT2G31760 59.1 2.7e-170 595.5
Hepe08g1932 . 68 530 C3H Transcription Factor Family AT2G31760 59.1 2.7e-170 595.5
Hepe04g1077 . 8 170 C3H Transcription Factor Family AT5G06490 51.4 2.0e-44 176.0
Hepe04g1077 . 8 170 C3H Transcription Factor Family AT5G06490 51.4 2.0e-44 176.0
Hepe02g3218 . 1 223 C3H Transcription Factor Family AT3G02290 61.9 5.3e-73 271.2
Hepe09g0688 . 1 307 C3H Transcription Factor Family AT1G11020 77.2 1.9e-137 485.7
Hepe02g1605 . 59 218 C3H Transcription Factor Family AT1G50440 75.0 1.5e-67 253.1
Hepe04g0085 . 8 361 C3H Transcription Factor Family AT5G08750 61.1 2.4e-120 429.1
Hepe07g0323 . 1 532 C3H Transcription Factor Family AT3G16090 62.6 9.0e-171 597.0
Hepe02g3218 . 1 223 C3H Transcription Factor Family AT5G38895 56.7 1.6e-70 263.5
Hepe10g0677 . 16 227 C3H Transcription Factor Family AT1G19310 66.5 1.7e-79 292.7
Hepe04g1181 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 2.1e-69 259.2
Hepe04g1468 . 9 323 C3H Transcription Factor Family AT2G22120 83.3 2.0e-159 558.9
Hepe10g0546 . 34 164 C3H Transcription Factor Family AT5G07040 59.7 2.9e-41 165.2
Hepe05g0814 . 1 166 C3H Transcription Factor Family AT5G07040 59.0 7.0e-40 160.6
Hepe09g0326 . 1 389 C3H Transcription Factor Family AT1G18470 76.6 4.1e-180 627.9
Hepe02g2731 . 12 389 C3H Transcription Factor Family AT1G18470 62.7 5.1e-138 488.0
Hepe04g1732 . 9 207 C3H Transcription Factor Family AT4G22250 51.2 6.3e-44 174.5
Hepe02g2686 . 64 292 C3H Transcription Factor Family AT1G68200 50.8 2.9e-50 196.1
Hepe03g1020 . 9 518 C3H Transcription Factor Family AT2G31770 57.0 1.1e-172 603.6
Hepe08g1843 . 54 545 C3H Transcription Factor Family AT2G31770 57.3 2.0e-171 599.4
Hepe08g1932 . 54 545 C3H Transcription Factor Family AT2G31770 57.3 2.0e-171 599.4
Hepe03g1020 . 56 525 C3H Transcription Factor Family AT2G31760 58.9 2.7e-170 595.5
Hepe08g1843 . 68 530 C3H Transcription Factor Family AT2G31760 59.1 2.7e-170 595.5
Hepe08g1932 . 68 530 C3H Transcription Factor Family AT2G31760 59.1 2.7e-170 595.5
Hepe06g1964 . 2 347 C3H Transcription Factor Family AT2G30580 50.9 3.0e-80 295.8
Hepe10g1904 . 46 275 C3H Transcription Factor Family AT5G55970 69.7 1.8e-95 346.3
Hepe04g0085 . 8 361 C3H Transcription Factor Family AT5G63780 57.2 6.4e-113 404.4
Hepe05g0517 . 1 424 C3H Transcription Factor Family AT3G58030 55.1 9.3e-111 397.5
Hepe10g1904 . 48 341 C3H Transcription Factor Family AT4G26580 64.5 2.5e-111 399.1
Hepe04g0661 . 1 485 C3H Transcription Factor Family AT5G01960 68.1 4.3e-169 591.3
Hepe01g0626 . 25 495 C3H Transcription Factor Family AT5G01960 59.3 9.0e-151 530.4
Hepe08g0373 . 1 151 C3H Transcription Factor Family AT2G04240 58.6 4.1e-43 171.4
Hepe02g0325 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 9.3e-40 160.2
Hepe07g0859 . 132 567 C3H Transcription Factor Family AT5G45290 51.1 1.5e-94 344.0
Hepe08g0155 . 37 243 C3H Transcription Factor Family AT5G12310 62.0 8.5e-56 214.2
Hepe09g0426 . 71 381 C3H Transcription Factor Family AT5G05810 50.7 1.7e-74 276.9
Hepe02g3339 . 32 210 C3H Transcription Factor Family AT5G05830 63.7 5.1e-59 224.6
Hepe05g0126 . 70 232 C3H Transcription Factor Family AT5G05830 63.2 1.1e-56 216.9
Hepe04g0791 . 19 148 C3H Transcription Factor Family AT5G05830 62.6 5.6e-42 167.9
Hepe09g0787 . 32 416 C3H Transcription Factor Family AT4G28890 51.7 2.6e-97 352.8
Hepe02g3218 . 1 223 C3H Transcription Factor Family AT5G15790 59.0 1.7e-71 266.2
Hepe02g3366 . 58 330 C3H Transcription Factor Family AT3G55530 79.3 5.3e-112 401.0
Hepe03g1971 . 1 272 C3H Transcription Factor Family AT1G63900 75.5 1.4e-115 412.9
Hepe05g1819 . 10 391 C3H Transcription Factor Family AT2G44580 53.3 2.8e-119 425.6
Hepe10g0677 . 25 150 C3H Transcription Factor Family AT1G74990 59.1 2.1e-40 162.2
Hepe01g1934 . 3 314 C3H Transcription Factor Family AT5G20910 62.5 6.9e-108 387.5
Hepe07g0323 . 119 532 C3H Transcription Factor Family AT1G65040 55.0 1.1e-108 390.2
Hepe04g1181 . 17 227 C3H Transcription Factor Family AT2G23780 63.0 1.1e-75 280.0
Hepe10g0677 . 6 229 C3H Transcription Factor Family AT2G23780 56.5 2.7e-69 258.8
Hepe05g0673 . 1 308 C3H Transcription Factor Family AT3G10810 55.9 1.8e-78 290.4
Hepe06g1524 . 1 165 C3H Transcription Factor Family AT1G63840 58.3 2.4e-46 182.2
Hepe03g0577 . 1 149 C3H Transcription Factor Family AT1G63840 51.3 1.9e-40 162.5
Hepe02g2619 . 17 350 C3H Transcription Factor Family AT1G68070 64.5 4.0e-117 418.3
Hepe01g2358 . 4 178 C3H Transcription Factor Family AT1G76410 56.7 1.3e-50 196.4
Hepe06g0855 . 6 180 C3H Transcription Factor Family AT1G76410 54.7 8.1e-48 187.2
Hepe10g0296 . 1 403 C3H Transcription Factor Family AT1G80400 53.6 4.6e-112 401.7
Hepe06g0855 . 18 174 C3H Transcription Factor Family AT2G17450 54.2 4.1e-39 158.3
Hepe08g1932 . 85 571 C3H Transcription Factor Family AT2G31510 77.5 2.0e-234 808.5
Hepe08g1843 . 85 571 C3H Transcription Factor Family AT2G31510 77.3 5.7e-234 807.0
Hepe03g1020 . 73 561 C3H Transcription Factor Family AT2G31510 75.7 5.6e-229 790.4
Hepe04g1077 . 7 169 C3H Transcription Factor Family AT2G35910 58.2 3.5e-50 195.3
Hepe05g0457 . 6 164 C3H Transcription Factor Family AT2G35910 53.4 1.1e-43 173.7
Hepe04g0245 . 1 307 C3H Transcription Factor Family AT2G41980 82.1 6.9e-153 537.0
Hepe08g0073 . 27 323 C3H Transcription Factor Family AT2G41980 72.2 5.3e-129 457.6
Hepe07g0062 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 5.9e-128 454.1
Hepe02g2500 . 49 306 C3H Transcription Factor Family AT2G41980 78.7 7.2e-126 447.2
Hepe01g0991 . 49 306 C3H Transcription Factor Family AT2G41980 79.5 2.1e-125 445.7
Hepe03g0666 . 44 302 C3H Transcription Factor Family AT2G41980 75.7 2.6e-123 438.7
Hepe07g0063 . 3 238 C3H Transcription Factor Family AT2G41980 80.9 8.0e-117 417.2
Hepe05g1522 . 117 391 C3H Transcription Factor Family AT3G06140 62.7 3.5e-95 345.5
Hepe05g0254 . 33 330 C3H Transcription Factor Family AT3G09770 56.7 5.8e-84 308.1
Hepe02g1648 . 130 674 C3H Transcription Factor Family AT3G26730 53.9 7.6e-158 554.7
Hepe09g0195 . 93 389 C3H Transcription Factor Family AT3G47990 71.0 1.6e-125 446.0
Hepe07g2232 . 23 309 C3H Transcription Factor Family AT3G47990 71.6 1.5e-120 429.5
Hepe01g2358 . 4 185 C3H Transcription Factor Family AT1G20823 56.7 7.6e-52 200.7
Hepe06g0855 . 13 170 C3H Transcription Factor Family AT1G20823 58.6 8.7e-48 187.2
Hepe08g1045 . 35 406 C3H Transcription Factor Family AT3G18930 53.4 4.5e-83 305.4
Hepe06g0897 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 3.2e-75 278.5
Hepe05g0126 . 9 232 C3H Transcription Factor Family AT2G37950 50.9 4.5e-47 184.9
Hepe05g0212 . 52 320 C3H Transcription Factor Family AT5G02750 52.3 1.8e-67 253.1
Hepe09g0326 . 5 467 C3H Transcription Factor Family AT1G73950 73.0 1.2e-198 689.5
Hepe02g2731 . 12 467 C3H Transcription Factor Family AT1G73950 58.6 1.8e-154 542.7
Hepe06g0242 . 1 158 C3H Transcription Factor Family AT1G33480 56.3 1.2e-44 177.2
Hepe02g2619 . 7 251 C3H Transcription Factor Family AT2G01735 58.9 5.3e-74 274.6
Hepe06g1213 . 60 270 C3H Transcription Factor Family AT2G01735 53.1 4.4e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000123 7 13 5 5 9 4 10 5 6 5 4 3 7 6 6 10 5 13 9 4 6 6 7 7 7 5 6 22 16 5 223