Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2500 ATGATGGCTTCTGGAAATCCTTATTTTGATGATATGAGGAGCAAACCAGAGCTAATTGATCCTCCCCAAAATGAAGAAATGATGGACATCAGGGAAACTGTGGAAGATCCAGCTCAAAATGAACTTAAACCTAATGTTGCCGTTTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCGGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCACACATTATGTTCTGGTTGCAAGCCTAGGGTGCACAATCGGTGCCCTACGTGTAGGCATGAACTTGGCAATATTAGATGTCTTGCATTGGAGAAGGTGGCCGCATCACTAGAACTACCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGTTGTCCATATGCTGGATCAGAATGTTCAATCGTTGGTGATATACCCTATTTGGTGACTCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTATGTAAAATCAAACCCTCAAGAAGTCGAAAACGCAACGTGGATGCTAACGGTTTTCAGTTGCTATGGTCAATACTTTTGCCTGCATTTCGAAGCTTTCCAGCTAGGGATGGCTCCAGTTTACATAGCTTTTTTGCGGTTCATGGGCGATGATAATGATGCGAAGAACTACAGCTATAGTCTTGAGGTGGGTGGAAATGGGAGGAAGATGGTATGGCAAGGGGTGCCAAGAAGCATCAGGGACAGCCATCGAAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAACATGGCTCTCTTCTTTTCCGGTGGAGACCGGAAAGAACTAAAGCTTAGGGTGACTGGTAGGATTTGGAAAGAACAGTGA 921 43.97 MMASGNPYFDDMRSKPELIDPPQNEEMMDIRETVEDPAQNELKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSIVGDIPYLVTHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCYGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 71600409 71603203 - Hsped.02g25000.1 Hepe02g2500 564001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2500 306 SUPERFAMILY RING/U-box 50 98 - -
Hepe02g2500 306 CDD RING-HC_SIAHs 56 94 - -
Hepe02g2500 306 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 58 93 IPR049548 -
Hepe02g2500 306 CDD Sina 172 300 - -
Hepe02g2500 306 Pfam Sina, TRAF-like domain 202 299 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Hepe02g2500 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 301 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Hepe02g2500 306 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Hepe02g2500 306 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270(InterPro)
Hepe02g2500 306 FunFam E3 ubiquitin-protein ligase SINAT3 110 166 - -
Hepe02g2500 306 SUPERFAMILY TRAF domain-like 111 303 - -
Hepe02g2500 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 167 299 - -
Hepe02g2500 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 110 IPR013083 -
Hepe02g2500 306 Pfam Sina, zinc finger 107 182 - -
Hepe02g2500 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 16 109 - -
Hepe02g2500 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 164 IPR013083 -
Hepe02g2500 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 299 IPR008974 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0991 Hepe-Chr1:74533023 Hepe02g2500 Hepe-Chr2:71600409 6.24e-218 dispersed
Hepe02g2500 Hepe-Chr2:71600409 Hepe07g0062 Hepe-Chr7:572045 5.86e-169 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2500 K04506 - csv:101220834 632.484