Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2513 ATGGGCAAGAAGAAGGGCTGGTTTTATTTAGTCAAGAAGCTATTTGTTTCAGAGACACAGCCAAAGCCTGAGAAGAAGGAAAAGAGATGGAAATGGGTATTTGGAAGGATGAAGAACAAGAGATTAGCCACACTGACAGCGCCATTGCCATCGCCATCAAAGGCGATGACGAGACGAGAGGAGGAAGAGGAGAGGAAGCAGGCTTTTTCTGTGGCCCTTGCGAGTACCGCGGCGGCCGAAGCGGCGGTTGCAGCTGCTAAGGCTGCTGTTGAGGTTGTGTGGCTCACAGGGACCCCTCAATCTCATCAACAAGAGGCTGCAGCTCTCAAGAAGGCCCCTCCATCTGATCTCCATAAACGTGAAAGGGAAATCTATGAGTTTGCTGCTATTATTATCCAAACTGCTTTCCGTGGCTTCCTTGCAAGGAAAGCATTGAGAGCACTGAAAGGAATAGTGAGGCTACAGGCAATTATCAGAGGGAGAGCTGTTAGGCGACAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAGGTCTGTTCAAATCGACTTCATCGCCCTCAAAACACTTTCGATTCTCCTGAAACCAAGCAGTTGCAGAGCTTGAAAGATAAGATTATAAGGTTGGATTCGGATGGACAAAGGTGGGATGATAGCCTATTATCAAAGGAAGAAGCCGATGCAGTGTTTTTGAGCAGGAAAGAGGCAGTGATCAGGAGAGAGCGAGTCAAGGAGTACTTGTTCGCCCACAGGAGATCTGCAGAATCAGAACGAAAGAAAGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTCTCCAAAAGCAAAGAACTCGAAGATTTGGACTCAATTTTCACCTCAAATCCAAAACACAAAGAGACAGAAGAAGGATTCAAACCAAACCCAACAACAACAAAAAACATGAACAGAATCACAGAACTCCCAAACCAATCTCCATCTCATAAACCAACTCTGAAAAACCTCTCTCACCACAAGAAGCAACGTTCATTGGGTGGAGGAACAACAATAGACTTAAACACCTCATTTTCAAGCTCCCCATTGGCTCCAACATACATGGCAGCCACAGAATCAGCCAAGGCAAAAGCAAAGTCGTTGAGCTCGCCAAAGCTGAGGCCAGCAGGGGCGTTGGACACGTGTTCCGATGGGAATTCGCCATGTAAGACAAAACAGCTCTGTTTGGTGTCATCAATGGCGAGTGAAGTGGGAATTAGCAGTGGGAGAAGGGGATTTCTGCAGCAGAGATCACCAGGGCTGAAGGGGCTTCCAGGACCTACAAGATCAAGCAGAACTCTCATCAACACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAAGTGCTTTCCAATGA 1419 47.08 MGKKKGWFYLVKKLFVSETQPKPEKKEKRWKWVFGRMKNKRLATLTAPLPSPSKAMTRREEEEERKQAFSVALASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAAALKKAPPSDLHKREREIYEFAAIIIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHRPQNTFDSPETKQLQSLKDKIIRLDSDGQRWDDSLLSKEEADAVFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSIFTSNPKHKETEEGFKPNPTTTKNMNRITELPNQSPSHKPTLKNLSHHKKQRSLGGGTTIDLNTSFSSSPLAPTYMAATESAKAKAKSLSSPKLRPAGALDTCSDGNSPCKTKQLCLVSSMASEVGISSGRRGFLQQRSPGLKGLPGPTRSSRTLINTKDLSIDSEHSLPNWDRQSAFQ 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 71787831 71791247 - Hsped.02g25130.1 Hepe02g2513 564014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2513 472 Pfam Protein of unknown function (DUF4005) 353 423 IPR025064 -
Hepe02g2513 472 PANTHER IQ-DOMAIN 5-RELATED 11 401 - -
Hepe02g2513 472 Pfam IQ calmodulin-binding motif 128 146 IPR000048 GO:0005515(InterPro)
Hepe02g2513 472 MobiDBLite consensus disorder prediction 310 334 - -
Hepe02g2513 472 MobiDBLite consensus disorder prediction 298 354 - -
Hepe02g2513 472 MobiDBLite consensus disorder prediction 443 472 - -
Hepe02g2513 472 ProSiteProfiles IQ motif profile. 125 153 - -
Hepe02g2513 472 MobiDBLite consensus disorder prediction 424 472 - -
Hepe02g2513 472 Gene3D - 124 176 - -
Hepe02g2513 472 MobiDBLite consensus disorder prediction 378 397 - -
Hepe02g2513 472 ProSiteProfiles IQ motif profile. 149 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2513 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2513 Hepe-Chr2:71787831 Hepe04g0914 Hepe-Chr4:63416213 3.79e-22 dispersed
Hepe02g2513 Hepe-Chr2:71787831 Hepe02g2982 Hepe-Chr2:79044009 3.45e-26 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2982 . 1 480 IQD Protein Family AT3G52290 53.7 2.4e-103 372.9
Hepe09g1233 . 1 396 IQD Protein Family AT3G22190 58.0 3.7e-96 349.0
Hepe01g1892 . 1 440 IQD Protein Family AT2G26180 60.2 1.4e-119 426.8
Hepe04g1898 . 1 279 IQD Protein Family AT2G33990 52.6 1.4e-64 243.4
Hepe07g0994 . 40 215 IQD Protein Family AT2G33990 54.7 8.0e-49 191.0
Hepe07g0994 . 21 230 IQD Protein Family AT3G15050 56.1 1.0e-56 217.2
Hepe02g2513 . 120 472 IQD Protein Family AT5G13460 50.8 5.4e-74 275.4
Hepe03g1505 . 1 398 IQD Protein Family AT3G16490 51.5 4.2e-70 262.3
Hepe09g0820 . 1 396 IQD Protein Family AT3G16490 51.8 1.6e-69 260.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35