Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2533 ATGAGGTATATCGGAGCACATGGGGTTGCAACACTGCACAGATACAAGTACAGTGGTGTTGATCACTCTTACGTTGCCAAATATATACTGCAACCTTTTTGGAGTCGCTTCGTCAATTTCTTTCCACTATGGATGCCTCCGAACATGATAACACTTGTGGGATTTATGTTTTTGGTCACATCAGCAGTTCTTGGTTATATATATTCTCCTCATCTGGATTCACCTCCGCCAAGGTGGGTTCATTTTGCGCATGGTTTGCTTCTTTTTCTTTATCAGACTTTTGATGCTGTTGATGGGAAGCAAGCACGGAGGACAAATTCCTCAAGTCCATTGGGAGAGCTTTTTGACCACGGTTATATTTCTATTTTTATTTTTGGTTCCGCCCTTGTTCCTGTGTTTCCTGCTTCTTTTTAA 414 41.55 MRYIGAHGVATLHRYKYSGVDHSYVAKYILQPFWSRFVNFFPLWMPPNMITLVGFMFLVTSAVLGYIYSPHLDSPPPRWVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGYISIFIFGSALVPVFPASF 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 72184820 72188743 - Hsped.02g25330.1 Hepe02g2533 564034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2533 137 Pfam CDP-alcohol phosphatidyltransferase 45 117 IPR000462 GO:0008654(InterPro)|GO:0016020(InterPro)|GO:0016780(InterPro)
Hepe02g2533 137 PANTHER ETHANOLAMINEPHOSPHOTRANSFERASE 2 122 IPR014472 -
Hepe02g2533 137 Gene3D - 22 136 IPR043130 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2533 K00993 - - csv:101205809 244.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2533 Hepe-Chr2:72184820 Hepe10g1845 Hepe-Chr10:55169086 2.10e-74 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1023 Blo01g00471 . Bda01g02109 . . . . . . . . . . . . . Cpe01g01905 . . . . . . . . . . . . . . . . . . . Csa05g02552 Chy10g01092 . . . . . . Bpe02g02297 Bma01g00142 Bma06g00787 . Cmo04g02295 Cmo15g00868 Cma04g02195 Cma15g00838 Car04g02122 Car15g00787 . . Bhi12g01050 . . . Hepe02g2533 . Lcy10g1523 Cla01g00726 Cam01g0754 Cec01g0753 Cco01g0779 Clacu01g0746 Cmu01g0715 Cre09g1790 Lsi09g00788 . . Cme09g01199
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000843 2 13 2 2 2 2 4 2 2 2 3 2 3 2 8 3 2 2 2 2 3 2 3 3 3 1 2 6 4 1 90