Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2535 ATGGAAATTAGAGGAGAGAAGAATGGGTTACTGTCTTGTTTGGCTTTGTTTTGGTTATGGGCTTCTGCAACTGAGGCTTCAACAGCCAAAGGTTTAAACCCGGAAGTTCAAGCTTTGATGGGGATCAAAGCTGCTTTGAAGGATCCTCATTCTGTTCTGGCTTGGGATGAAGATGCTGTGGATCCATGCACTTGGAATTTGATCACTTGCTCTCCTGATAAATTTGTCATTGGCATAGGAGCTCCAAGCCAAAACTTCTCTGGTACACTCTCACCAAGTGTTGGAAATTTGACCAACCTCCAATTTTTGCTTCTTCAGGATAACAATATATCAGGAGAAATTCCCAATGAGATTAGCAAGATATCAAAACTTCACACACTTGATCTTTCAAACAACTTGTTCTCTGGTGAAATTCCCAGCTCTTTCTCAATTTTGAAAAGCCTCCAATACCTGAGACTCAACAATAACAGCTTCTCCGGGCCAATCCCGCCATCGCTGGCTAACATGAACCAGCTTGCCTTGCTGGACCTGTCCTATAATAATTTGAGCAGTCCTGTGCCCAGATTGCTGGCTAAGACATTTAACTTTACTGGAAACTCTTTGATTTGTGCCCCTGGAACTAAGGAAGTATGCTATGGAACAACTCCATTGCCACTTTCTTTTGCTGTTACTAATTCCACATACTCACAACCTCCTAGGAGACATAAAGGCCAGAGAATTGCCTTAGTCATTGGTCTTAGCTTGGGCTGCATCTGTCTGTTAACTCTTGCATATGGTTTCTTTTTCTGGCGAAAGCATAGGCACAACCAGCAAATATTCTTTGAAGCTAATGATCGTCACCGGGACGAACTTAGCCTAGGGAACATAAAGAGGTTTCAGTTCAGAGAACTTCAGAATGCCACTCACAAATTCAGCAGTAAAAATTTGATTGGAAAAGGTGGTTTTGGACATGTATACAGAGGATTTCTACAAGATGGCACCATTGTAGCTGTCAAGAGACTCAAAGATGGGAATGCTATGAGAGGAGAGATCCAGTTTCAGACTGAAGTGGAGATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAAGTTGTATGGTTTCTGTATGACAGAAACCGAGAGGCTTTTGGTCTATCCATATATGTCGAATGGCAGCGTCGCTACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGCATTGCCTTGGGAGCTGCTAGGGGCTTGTTATACCTACATGAACAGTGTGATCCAAAAATAATTCACAGGGATGTGAAAGCTGCAAATATACTGCTCGATGATTTCTGCGAGGCCGTGGTCGGTGATTTTGGGCTGGCGAAGCTGTTAGATCACAGAGATTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGCCACATGGCACCAGAGTATCTGTCAACAGGCCAATCCTCAGAGAAAACAGATGTTTTCGGGTTCGGAATTCTACTACTCGAGCTCATATCAGGTCAAAGAGCTCTAGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGATACACCAAGAAAAGAAGCTAGAAATGCTTGTTGACAAAGACTTGAGAAGTAGTTACGACCCGATTGAACTTGAAGAAATTGTTCGAGTAGCTCTCTTGTGCATCCATTATCTTCCAAGCCACAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGGCTTGTAGAGAAATGGGAAGCTTCCCAAAGAGCAGAAGCAAGCAGGGGCAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCCGATCTTACCGATGATTTTTCACTGTTTGCTCAAGCGATAGAGCTCTCGGGACCGAGATAA 1875 44.0 MEIRGEKNGLLSCLALFWLWASATEASTAKGLNPEVQALMGIKAALKDPHSVLAWDEDAVDPCTWNLITCSPDKFVIGIGAPSQNFSGTLSPSVGNLTNLQFLLLQDNNISGEIPNEISKISKLHTLDLSNNLFSGEIPSSFSILKSLQYLRLNNNSFSGPIPPSLANMNQLALLDLSYNNLSSPVPRLLAKTFNFTGNSLICAPGTKEVCYGTTPLPLSFAVTNSTYSQPPRRHKGQRIALVIGLSLGCICLLTLAYGFFFWRKHRHNQQIFFEANDRHRDELSLGNIKRFQFRELQNATHKFSSKNLIGKGGFGHVYRGFLQDGTIVAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLKLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKSIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHMAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHQEKKLEMLVDKDLRSSYDPIELEEIVRVALLCIHYLPSHRPKMSEVVRMLEGDGLVEKWEASQRAEASRGRANEFSSSERYSDLTDDFSLFAQAIELSGPR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 72261259 72265659 + Hsped.02g25350.1 Hepe02g2535 564036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2535 624 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Hepe02g2535 624 FunFam Somatic embryogenesis receptor-like kinase 1 381 593 - -
Hepe02g2535 624 SMART serkin_6 304 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2535 624 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 213 - -
Hepe02g2535 624 SUPERFAMILY Protein kinase-like (PK-like) 283 574 IPR011009 -
Hepe02g2535 624 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Hepe02g2535 624 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Hepe02g2535 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 624 - -
Hepe02g2535 624 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Hepe02g2535 624 SUPERFAMILY L domain-like 34 203 - -
Hepe02g2535 624 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
Hepe02g2535 624 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515(InterPro)
Hepe02g2535 624 ProSiteProfiles Protein kinase domain profile. 304 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g2535 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g2535 624 Gene3D Ribonuclease Inhibitor 32 213 IPR032675 -
Hepe02g2535 624 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Hepe02g2535 624 Pfam Protein tyrosine and serine/threonine kinase 307 573 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2535 Hepe-Chr2:72261259 Hepe02g3235 Hepe-Chr2:81933331 4.44e-266 dispersed
Hepe02g2535 Hepe-Chr2:72261259 Hepe07g0984 Hepe-Chr7:13399979 6.49e-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72591 PF00069 Pkinase 6.80E-45 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2535 - - - 0.0