Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2543 ATGAATGGGAAGGATGAATTTGAAGTTGAGAGTAGGACCAGTGATCCTATGAGTATCTCTTCTGGCTGGCAATTTGCTCCTGCTAATCTCACTAATGAGTCTATGGGATTCGTTTCCACCGGGGTTCCGCCTGTTGTTAACAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCAACTTCAATGTCTAACTTATTTACTCCAACCCTTTTGAACCATCACACCAACTCGCAAAACTCGGGGTTCTGCAGCACTTTTAATGAACAAAACAGCATGGTTTCTTCTAATACGACTGTAGTTGATGGAGAGGGTCTGAATTCTTTGAGATCTAATAGTGATAGGATGCTGGGAATGGATTGGAACGAACAAAATCAATGGATGAAAGGTGTTTTCTCAGGAAACGTTCCTGGAATATTTCCAGCTAATTTATCTCAACTTCCAGCTGATTCGGCATTCATAGAGCGTGCAGCTCGGCTCTCCTGCTTCAATAGTGGAGTTTTCGGGGCTCAGCCTGCCGGTCCATTTGGTATTTCAGACTATATAGGCATTCATTCTAGGGGTGCATTTGGAAGGCAAGAAGTTATTTCCAGAAATGGATCCTTCAAAGAGGTTTCTTTGCCCATGGAGCTTGAGGCTAAAGAAAAGAGTCCACAAAAGGATGAGAAAGAAAGTGAGATGTCTCAAGACAGGACTAAACAAGGTGGTGGTGGTGAGTCTGGTAATGAATCTGATGAAGCTGGGTTTAGTGGTGGTCAAGACAAGCGATGCACATTGGGAGGTACTATTGCAGAAACATCTGGGGAAGGACTGAGCTTCAAGAAAAGGAAGAGGGGTGAGCAGAACATGGGACTTGGACAAGTTAAAGAAGCTCCACAACAAATTAACGAAACCGCAAAGAATGGAGCATTAAATCAGCAGAAGGGAGACCAAAACCCAAGTTCTACTGCTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAAGCATCAGATGCTCCCAAAGAAGATTATATTCATGTTAGAGCGCGAAGAGGCCAGGCGACAAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTGCCCGGGTGCAGTAAGGTCACTGGAAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCACTGCAGCGGCAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTGGATGTTAACATTGAAGAGCTCCTCACAAAAGAAATCATTCAATCAAAGGCTGGTCCATCCTTATTTGGTTTTCCTCCTGATCTGCCCATGCCTTACCTCCCGCAACATCCGTCTCACCATGGACTTATTCCGCCTTGTCTTCCGAACATGGGGAGCTCTCCGGACCTGCTACGAAGAACCATTAATTCCCAGCTGACATCACTTGTTGGTGCATTCAAGGAGCCTGTTCAGCTATCGAACATGTGGGAGCATGATCTTCACAATGTTGTTCCGATGAACTTCGATGTCGCTGCACCCTCCAATGGCCAAGATGTTGATGGTTCTACTCCACAGTGA 1578 44.8 MNGKDEFEVESRTSDPMSISSGWQFAPANLTNESMGFVSTGVPPVVNNGDLGVSSCPSTSMSNLFTPTLLNHHTNSQNSGFCSTFNEQNSMVSSNTTVVDGEGLNSLRSNSDRMLGMDWNEQNQWMKGVFSGNVPGIFPANLSQLPADSAFIERAARLSCFNSGVFGAQPAGPFGISDYIGIHSRGAFGRQEVISRNGSFKEVSLPMELEAKEKSPQKDEKESEMSQDRTKQGGGGESGNESDEAGFSGGQDKRCTLGGTIAETSGEGLSFKKRKRGEQNMGLGQVKEAPQQINETAKNGALNQQKGDQNPSSTANKPAGKQGKQDSQASDAPKEDYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDVNIEELLTKEIIQSKAGPSLFGFPPDLPMPYLPQHPSHHGLIPPCLPNMGSSPDLLRRTINSQLTSLVGAFKEPVQLSNMWEHDLHNVVPMNFDVAAPSNGQDVDGSTPQ 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 72377186 72381073 + Hsped.02g25430.1 Hepe02g2543 564044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2543 525 MobiDBLite consensus disorder prediction 1 21 - -
Hepe02g2543 525 Pfam Helix-loop-helix DNA-binding domain 349 397 IPR011598 GO:0046983(InterPro)
Hepe02g2543 525 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 143 444 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe02g2543 525 MobiDBLite consensus disorder prediction 205 261 - -
Hepe02g2543 525 SMART finulus 352 402 IPR011598 GO:0046983(InterPro)
Hepe02g2543 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 414 IPR036638 GO:0046983(InterPro)
Hepe02g2543 525 Gene3D - 343 419 IPR036638 GO:0046983(InterPro)
Hepe02g2543 525 MobiDBLite consensus disorder prediction 301 327 - -
Hepe02g2543 525 FunFam Basic helix-loop-helix transcription factor 343 415 - -
Hepe02g2543 525 MobiDBLite consensus disorder prediction 206 228 - -
Hepe02g2543 525 MobiDBLite consensus disorder prediction 301 333 - -
Hepe02g2543 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 396 IPR011598 GO:0046983(InterPro)
Hepe02g2543 525 CDD bHLH_AtBPE_like 336 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1851 Hepe-Chr1:83410454 Hepe02g2543 Hepe-Chr2:72377186 1.19e-46 dispersed
Hepe02g2543 Hepe-Chr2:72377186 Hepe10g1832 Hepe-Chr10:55051312 7.07e-141 dispersed
Hepe02g2543 Hepe-Chr2:72377186 Hepe02g0492 Hepe-Chr2:4842224 1.87e-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55106 PF00010 HLH 6.40E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2543 - - - 0.0