Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2558 ATGAGTGGAGGAGATGTAGCTACGACGGGGGCGACGGCGGCGGGCTACGCCGAACCCCAGTACGTGAGGGCCAAGACTTCTGTATGGTGGGATATCGAGAATTGTCAAGTCCCTAAGGGCTGCGATCCTCACGCCATCGCTCAAAACATCAGCTCAGCTCTCGTCAAAATCAACTACTGCGGTCCTGTTTCAATTTCCGCTTATGGAGACACCAATCGCATTCCTAACTCTATTCAGCAAGCTCTCTCCAGTACTGGTATCGCCTTGAATCACGTCCCTGCCGGTGTTAAGGATGCAAGTGACAAGAAGATTCTAGTTGATATGCTGTTTTGGGCGGTTGATAATCCTGCCCCTGCAAATTATTTGCTAATTTCCGGTGATAGGGATTTTTCTAACGCACTTCATCAGCTAAGAATGAGAAGATATAATATTCTTCTTGCACAACCACAAAAGGCTTCTGCACCACTAGTCGCAGCAGCAAAGAGTGTGTGGCTTTGGATGAGTCTTTCAGCTGGAGGACCCCCAATATCCAATGCTGAATCATCTCAACTTGTGAAGGGGATCGTCACATCTAACCCTCAAATATCACATAACTCTGAATTTGATCATAATCAGCCACCACAAGCTATAGTTTACAACCCTGAAAATGTCTCTTTGGGAAACCAAAGATCTTATTCTACTGAGAGGATAGGGGACAACAAACATAAAGGTAAACATATACAAAAAAGCTCCAACCAACCAGTCCTATCCAGAGCTTTAAGCTCACCTATTTCTCTACCAGAACAAAACCTTAATTTTTTAAACCAACCGAATCATATGCAAGCAAAGCAGTTTAAGAAAGCACCCCATGAATTCTTTGGTAATAGCAATTCTGTACCCTCTTCTAGTCAGTCTACTTCAAACCCGTTTATTGAAAATTCCAGTCATGCTAGGACTGCTGGTAATGTTTCAATGGGTAGTTCCTCCTCAAGTTACCAACCTTCCAATCATGCTAGGACCGATGGCAATTTTTCAATGGGTAGTTCCTCAAATTACCAGCCTTCCAGTCATGCTAGGATTGATGGCAATGTTCCAATGGGTAGTTCCTCAAACTACCAGCCTTCCAATCATGCCAGGACTGATGTCAATGTTCCAATGGGTACTTCCTCAAACTACCAGCCTTCCAATCATGCCAGGACTGATGTCAATGTTCCAATGGGTAGTTCCTCAAATTACCAGCCTTCCAATCATGCCAGGACTGATGTCAATGTTCCAATGGGTACTTCCTCAAATTACCAGCCTTCCAGTAATGCTAGGACCGATGGCAATGTTCCAATGGGTAGTTCCTCAAATTACCAGCCTTCCGGTCATGCTAGGACTGATGGCAATGTTCAAATGGGTAGTTCCTCAAGTTACCAGCCTCCTCACTTGAGGCAAAACAACATGCAGTTTCATCCTTCTTTTCGACCAGATAATGGTTTTCCTCCTAACTCCCATAATCATAATTCTTTCCCAGTTCCGGGTCAACCTGATTTATCTGCACCCAATATTAGTAAGCTACATATCTCTGATTATCCCAATTATGCTACAAGTCCTCAAAATTTTCATCATCAAGCTGGTGAATTTAGACCACATACCAAGTCTCAAAATCCTGCTAACTTTAATATGGCAGACAAAGGCCGCAATCAGAATGGTGTCCAGTCATTTCATCATGATGCGATGAATAAAAGGCATGCTCGTGATGTAGTAGAGTATATACCTCATTCATCTTCCAGCACTGTGACAAAAACGTTTTCTCATAATGATGTCTGGGGATCCCAAGGGCAACCACCACCCTCGGAGTACACTCAAGGACTTATTGGAGTTATTCTTCTTGCATTAAACACCCTGAAAATGGAAAAAATTATGCCAACGGAGGCAAATATAGCTGACTGCATCCGATATGGAGATTTGAGAAACTGCAATACTGATGTAAGATTGGCACTAGAAAGTGCGGTAGAGCATAATATGGTAGTGAAGCAGAATTTAGGAGCACTGCAATTGTATGTTGGTAAAACAGAAAAATTGTGGAAGTGTGTGAACCCGCTAGATCGGTATCCCAATCATCACCAAAAAGCTGTATGTGATAAGATTCAAAGCTTTTTGGCTTCTCCAGCTGGTCGTTCTGCAATAATAGCTTCTCGATGCAGATATGAAGCAGCATTGATTCTCAGGAAAGAATGTTTAGTAGATTTTTCCTTGGGCGAAGTGCTTCAGATTTTGAATATGATAACCTCAATGAAGAAATGGATTATGCATCATATTTCTGGATGGCAGCCAATTAATATTATTATAACAGAAGGTAATACAGATGCAAGTTCAAGAACTGAACTTGATTGA 2358 42.37 MSGGDVATTGATAAGYAEPQYVRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPNSIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWMSLSAGGPPISNAESSQLVKGIVTSNPQISHNSEFDHNQPPQAIVYNPENVSLGNQRSYSTERIGDNKHKGKHIQKSSNQPVLSRALSSPISLPEQNLNFLNQPNHMQAKQFKKAPHEFFGNSNSVPSSSQSTSNPFIENSSHARTAGNVSMGSSSSSYQPSNHARTDGNFSMGSSSNYQPSSHARIDGNVPMGSSSNYQPSNHARTDVNVPMGTSSNYQPSNHARTDVNVPMGSSSNYQPSNHARTDVNVPMGTSSNYQPSSNARTDGNVPMGSSSNYQPSGHARTDGNVQMGSSSSYQPPHLRQNNMQFHPSFRPDNGFPPNSHNHNSFPVPGQPDLSAPNISKLHISDYPNYATSPQNFHHQAGEFRPHTKSQNPANFNMADKGRNQNGVQSFHHDAMNKRHARDVVEYIPHSSSSTVTKTFSHNDVWGSQGQPPPSEYTQGLIGVILLALNTLKMEKIMPTEANIADCIRYGDLRNCNTDVRLALESAVEHNMVVKQNLGALQLYVGKTEKLWKCVNPLDRYPNHHQKAVCDKIQSFLASPAGRSAIIASRCRYEAALILRKECLVDFSLGEVLQILNMITSMKKWIMHHISGWQPINIIITEGNTDASSRTELD 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 72517194 72520731 - Hsped.02g25580.1 Hepe02g2558 564059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2558 785 Pfam NYN domain 25 161 IPR021139 GO:0004540(InterPro)
Hepe02g2558 785 MobiDBLite consensus disorder prediction 537 559 - -
Hepe02g2558 785 MobiDBLite consensus disorder prediction 284 511 - -
Hepe02g2558 785 MobiDBLite consensus disorder prediction 195 253 - -
Hepe02g2558 785 Pfam OST-HTH Associated domain 718 775 IPR025677 -
Hepe02g2558 785 CDD PIN_limkain_b1_N_like 25 149 - -
Hepe02g2558 785 Gene3D - 20 168 - -
Hepe02g2558 785 MobiDBLite consensus disorder prediction 195 227 - -
Hepe02g2558 785 MobiDBLite consensus disorder prediction 287 502 - -
Hepe02g2558 785 MobiDBLite consensus disorder prediction 527 559 - -
Hepe02g2558 785 PANTHER LIMKAIN B LKAP 18 663 IPR024768 GO:0005777(InterPro)|GO:0010468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2558 Hepe-Chr2:72517194 Hepe10g0739 Hepe-Chr10:11329802 3.69e-37 transposed
Hepe02g2558 Hepe-Chr2:72517194 HepeContig67g0003 Hepe-ChrContig67:497186 3.71e-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2558 - - - 0.0