Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2579 ATGGTTATGTCCAAAACATTTTCTGAATCGGATGTCTCTGTACATTCCACCTTTGCTTCTCGCTATGTTCGGGACTCTGCTCCAAGATTCACCATGCCCGATAACTCCATGCCCAAAGAGGCTGCCTTTCAAATCATCAACGACGAGCTCATGCTGGATGGCAACCCGAGGTTGAATTTGGCCTCCTTTGTGACCACCTGGATGGAGCCCGAATGCGATAAGCTGATTATGGACTCTGTCAACAAGAACTACGTCGACATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGATGCGTCAACATGATTGCCCATCTCTTCAACGCTCCCTTGGGAGACTCCGACACGGCGGTGGGAGTTGGGACGGTGGGGTCGTCGGAGGCCATCATGCTCGCCGGACTTGCCTTCAAGAGGAAGTGGCAGAACAAGCGCAAGGCCGAGGGGAAGCCCTTCGACAAGCCTAATATTGTGACTGGTGCGAATGTCCAAGTTTGTTGGGAGAAATTTGCGAGATACTTCGAGGTGGAGCTGAAGGAAGTGAAGGTGATTGAAGGGTACTACGTGATGGATCCTGTTAAGGCTGTTGAGATGGTGGATGAGAATACCATCTGTGTTGCTGCCATTTTGGGCTCAACTTACAATGGAGAGTTTGAAGACGTGAAGCTGTTGAATGATTTGTTGGTCGAGAAGAATAGAGAAAGTGGTTGGGATACGCCCATTCATGTGGATGCAGCCAGTGGTGGCTTCATTGCGCCATTTTTGTATCCCGACCTTGAATGGGACTTCAGACTTCCATTGGTGAAGAGCATCAATGTGAGTGGCCACAAGTATGGGCTTGTCTACGCTGGAATTGGTTGGATCATTTGGAGGAACAAAGAAGATTTACCTGAAGAACTCATTTTCCACATCAATTATCTTGGAGCTGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCTAGCCAAATCATTGCTCAATATTACCAACTAATCCGCTTGGGTTTTGAGGGATACCGCAATGTGATGCAAAATTGTCACGACAACGCAATGGTGTTAAAGGAAGGACTTGAAAACACAGGGAGGTTCACTATAGCGTCTAAGGACATGGGAGTCCCAGTGGTGGCCTTCTCTTTGAAAGACAGGAGTCGACACGACGAATTTGAGGTTTCAGAAATGTTGCGACGCTTCGGATGGATTGTGCCCGCGTATCCCATGCCAGAGGGCGCCAAACATGTGTCAGTTCTTCGTGTGGTTATCAGAGAAGACTTCTCTCGCACCCTTGCAGAGCGTCTCGTGCTTGATATCATAAAGGTTTTGGCAGAGCTTGATACTCTTCCACCAAAGAATATTGAGAATGGAAAAACTGAGACGGCAGTGAAGAAGTCTACTGAGGAGACAGAGATCAGAGAAATAGCAACTTATTGGAAGAATATAACTAAGGCTAAAAAAATCAAACTTGTTGCGAATCAAGCTAGTCCTTCCGTTACAGTGGTTGCCAAATAA 1509 47.51 MVMSKTFSESDVSVHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKVIEGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNRESGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWIIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLENTGRFTIASKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIIKVLAELDTLPPKNIENGKTETAVKKSTEETEIREIATYWKNITKAKKIKLVANQASPSVTVVAK 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 72776323 72778058 + Hsped.02g25790.1 Hepe02g2579 564080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2579 502 PANTHER GLUTAMATE DECARBOXYLASE 1 485 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Hepe02g2579 502 CDD DOPA_deC_like 59 439 - -
Hepe02g2579 502 Gene3D - 1 65 - -
Hepe02g2579 502 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Hepe02g2579 502 Gene3D - 361 448 - -
Hepe02g2579 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Hepe02g2579 502 FunFam Glutamate decarboxylase 361 448 - -
Hepe02g2579 502 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Hepe02g2579 502 Gene3D - 66 360 IPR015421 -
Hepe02g2579 502 FunFam Glutamate decarboxylase 1 65 - -
Hepe02g2579 502 FunFam Glutamate decarboxylase 66 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2410 Hepe-Chr2:69824793 Hepe02g2579 Hepe-Chr2:72776323 3.00e-295 dispersed
Hepe02g2579 Hepe-Chr2:72776323 Hepe07g2558 Hepe-Chr7:70019638 2.60e-208 dispersed
Hepe02g2578 Hepe-Chr2:72755891 Hepe02g2579 Hepe-Chr2:72776323 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2579 K01580 - csv:101208026 957.592