Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2586 ATGTTGAAAGCTTCTTCTTCTTCTGGTGGCCCTCCTCTTCCTCATCCTCCCAATTCTGACCATGGGGTCACCAGCAAAAGAAAAAGAAGACCTGCAGGCACTCCAGATCCGGATGCCGAGGTAGTTTCTTTGTCGCCCAAAACGCTTTTGGAATCGGATCGGTATGTTTGTGAGATATGCAACCAAGGGTTCCAACGGGATCAGAATCTGCAGATGCATCGCCGCCGCCACAAGGTGCCGTGGAAGCTACTTAAGAGGGCGGAGACGGCGGAGGCAGTCAAGAAAAAGGTGTTTGTTTGCCCGGAGCCCACTTGTCTTCACCATGATCCTTGCCATGCCCTTGGTGACCTCGTCGGCATCAAGAAGCACTTCCGTAGAAAGCACAGCAACCAAAAGCACTGGGTTTGTGACAAGTGCTCTAAGGCTTATGCTGTCCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTCATAGAGCACCAAGACGCTTGCAATCTCAGACATATGAGGTCCGATGATCAGCTGCAGGCGGTGGTGGTGGCGCCACCGCCGTCGTTACTACAACCCTACTCACGATCAATTTCTTACACTGGCGCCTCCACCAGCAACGACCATAGCTTTCAAATGGGTACTCCCCTACGAGGGTTTCCAATTTTATCATCAAACTCAGATCGAAACATCAACATTAATTTCCCCGATCACCATGATCTCGAGCTCCATCTCTCTTCTCCAAGCTCGGCATTTCTCAAGCTCTCAATTGGGTCCAACAAGGAGCCAAGCGACGAGCGCCAGCTCGAGCTGGCAATAGCGGAGAAGGCGTACGCTGACGAGGCAAGACGAGAGGCGAAACGACAGATCGAAATTGCAGAGATCGAGTTTGCAAATGCTAAAATGATACGGCAGCAAGCTCAGGCGGAGTTGGAGAAGGCAAGGATCTTGAAGGAAGAAGCCAGCCGGAAAATGAGCTCCACCATTATGGAAATCACTTGCCAAACTTGTCGGTTGCACTTCCACATGAGCTCTGCCGCGCCCGAGGAGACCTCGCTCGCCATTAGCTACATGTCGTCCGCTACAACGGAAGGCGATGGAGAATGA 1149 51.61 MLKASSSSGGPPLPHPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRHMRSDDQLQAVVVAPPPSLLQPYSRSISYTGASTSNDHSFQMGTPLRGFPILSSNSDRNININFPDHHDLELHLSSPSSAFLKLSIGSNKEPSDERQLELAIAEKAYADEARREAKRQIEIAEIEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHMSSAAPEETSLAISYMSSATTEGDGE 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 72942126 72944374 - Hsped.02g25860.1 Hepe02g2586 564087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2586 382 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 157 - -
Hepe02g2586 382 SMART c2h2final6 134 161 IPR013087 -
Hepe02g2586 382 SMART c2h2final6 98 128 IPR013087 -
Hepe02g2586 382 SMART c2h2final6 55 77 IPR013087 -
Hepe02g2586 382 Gene3D Classic Zinc Finger 33 101 - -
Hepe02g2586 382 SUPERFAMILY beta-beta-alpha zinc fingers 54 154 IPR036236 -
Hepe02g2586 382 FunFam protein indeterminate-domain 12-like 34 104 - -
Hepe02g2586 382 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Hepe02g2586 382 MobiDBLite consensus disorder prediction 1 41 - -
Hepe02g2586 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Hepe02g2586 382 Gene3D Classic Zinc Finger 119 195 - -
Hepe02g2586 382 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 336 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe02g2586 382 MobiDBLite consensus disorder prediction 21 35 - -
Hepe02g2586 382 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Hepe02g2586 382 Coils Coil 297 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2586 Hepe-Chr2:72942126 Hepe07g2566 Hepe-Chr7:70116971 3.19e-113 dispersed
Hepe02g2586 Hepe-Chr2:72942126 Hepe04g0920 Hepe-Chr4:63494671 1.18e-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55107 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2586 K25871 - csv:101210468 676.396