Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2589 ATGGATGGTGATGCGTTGAACATGCGTAATTGGGGTTACTATGAACCGTCCTTGAAAGCACATCTTGGTCTGCAGCTCATGTCTTCAATTGCTGAGCGAGATGTGAAGCATTTTTTTCCTGGACGCGACCACCCTTCTGCTATTATTAACATGAATGGAGCATTTCATTCACGGGAGTCTGTTGTTTCTGAAGCACCAGTACCAACAAACTGGGTGAGAGATGGTTGGATAAATCATAATAGAGACAAGCTTCTCAACATGTTACCCCCCAATCCAAGTTATTCCATTATTGCGGAAACCTCGGCTGCGCAACCTTTGCAAATGTTACCGCCACCTGACACATCAAGAGATGAAATGGTCGGCAGGATTGAAGAACCACCTGTGAAGAAGGAAACTAAACAATCAAAGAAACGACAGAATGGAGGTGCTCCCAAAACTCCAAAACCAAAGAAGCCTCGAAAGCCCAAAAATATTGATCCTTCAGTTCAGCAGATGAAGGCACCGAGAAAGAAGATGGATCTTGTTATAAACGGGCTGGATATGGACATTTCTGGTATCCCAATTCCTATATGCTCTTGCACTGGAGCTCCTCATCAGTGTTATAGATGGGGCTATGGTGGCTGGCAATCAGCTTGTTGTACCACAACTTTATCTATACATCCTTTGCCCATGAGTGAGAAGCGGCGAGGTGCAAGAATTGCTGGGCGAAAAATGAGTCAAGGTGCTTTTAAGAAGGTTTTGGAGAAACTAGCAGCTCAAGGTTATAACTTCTCTAGCCCAATTGATTTAAGAAGCCATTGGGCAAGGCATGGGACCAATAAGTTTGTCACTATCAGGTAG 840 44.29 MDGDALNMRNWGYYEPSLKAHLGLQLMSSIAERDVKHFFPGRDHPSAIINMNGAFHSRESVVSEAPVPTNWVRDGWINHNRDKLLNMLPPNPSYSIIAETSAAQPLQMLPPPDTSRDEMVGRIEEPPVKKETKQSKKRQNGGAPKTPKPKKPRKPKNIDPSVQQMKAPRKKMDLVINGLDMDISGIPIPICSCTGAPHQCYRWGYGGWQSACCTTTLSIHPLPMSEKRRGARIAGRKMSQGAFKKVLEKLAAQGYNFSSPIDLRSHWARHGTNKFVTIR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 72986404 72987243 + Hsped.02g25890.1 Hepe02g2589 564090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2589 279 MobiDBLite consensus disorder prediction 124 170 - -
Hepe02g2589 279 PANTHER - 1 279 IPR010409 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009723(PANTHER)|GO:0043565(PANTHER)
Hepe02g2589 279 MobiDBLite consensus disorder prediction 124 138 - -
Hepe02g2589 279 SMART GAGA_bind_2 1 279 IPR010409 -
Hepe02g2589 279 Pfam GAGA binding protein-like family 6 279 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2589 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0461 Hepe-Chr2:4531650 Hepe02g2589 Hepe-Chr2:72986404 3.56e-41 dispersed
Hepe02g2589 Hepe-Chr2:72986404 Hepe10g0135 Hepe-Chr10:1366617 4.65e-44 dispersed
Hepe02g2589 Hepe-Chr2:72986404 Hepe02g2590 Hepe-Chr2:72987880 6.14e-144 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g554 . . . . . . . . . . . . . . . . Cpe01g01864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02245 Cmo15g00916 Cma04g02151 Cma15g00880 Car04g02085 Car15g00827 Cpe13g00435 . Bhi12g00980 . . . Hepe02g2589 . . Cla01g00663 Cam01g0694 Cec01g0686 Cco01g0714 Clacu01g0682 Cmu01g0657 Cre09g1849 Lsi09g00717 Csa05g01290 . Cme09g01290
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2590 . 8 286 BBR/BPC Transcription factor family AT2G01930 56.1 6.5e-81 297.7
Hepe02g2589 . 1 279 BBR/BPC Transcription factor family AT2G01930 50.2 7.2e-72 267.7
Hepe02g2590 . 168 286 BBR/BPC Transcription factor family AT2G35550 60.5 1.4e-41 166.8
Hepe02g2589 . 160 279 BBR/BPC Transcription factor family AT2G35550 57.5 2.0e-40 162.9
Hepe10g0135 . 225 339 BBR/BPC Transcription factor family AT2G35550 57.4 9.3e-38 154.1
Hepe02g0461 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 4.6e-37 151.8
Hepe10g0135 . 233 339 BBR/BPC Transcription factor family AT1G68120 57.0 4.2e-37 152.1
Hepe02g0461 . 1 313 BBR/BPC Transcription factor family AT2G21240 62.9 8.1e-82 300.8
Hepe10g0135 . 1 339 BBR/BPC Transcription factor family AT2G21240 50.7 9.3e-62 234.2
Hepe02g0461 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.1 4.4e-69 258.5
Hepe10g0135 . 1 339 BBR/BPC Transcription factor family AT4G38910 50.4 2.8e-55 212.6
Hepe10g0135 . 88 339 BBR/BPC Transcription factor family AT5G42520 60.9 8.2e-84 307.4
Hepe02g2590 . 168 286 BBR/BPC Transcription factor family AT2G35550 60.5 1.4e-41 166.8
Hepe02g2589 . 160 279 BBR/BPC Transcription factor family AT2G35550 57.5 2.0e-40 162.9
Hepe10g0135 . 225 339 BBR/BPC Transcription factor family AT2G35550 57.4 9.3e-38 154.1
Hepe02g0461 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 4.6e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002345 4 2 3 4 4 1 2 1 1 0 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 2 5 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55108 PF06217 GAGA_bind 8.00E-104 No_clan Hepe TF