Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2600 ATGGGTATGAAAATGCAGCAAAGACAGAACTCTGCGGCCAAGTGGAATGAGCAAATGGGAACAACAAATAAGGGTTACACATTTGTTCAAGCCAACAGGGCTTGGCTTCGAAAGTATCTACTGCTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATATCAAAGTGAGGAGGAATGAAGTGTTGGGGAGCATGTGTGAAGAGAGGGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTCAACCATGTTCATGCCTTGGCTGTGCTTGTTTCCACCTTTCATTACTTCAAGAGCCCTTCTGCAATTGATCAGGAAACTTTTGCGGAGTACACAGCCAGAACTGCTTTCGAACGGCCTCTACTGAGTGGGGTGGCGTATGCACAGAGAGTGATTCATTCAGAGAGGGATATATTCGAAAAGCAACATGGGTGGATGATTAAAACAATGAAAAGAGAACCTTCGCCAATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCCTATATTGAATCACTGGATATGATGTCAGGAGAGGAGGATCGTGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTCTTAACAAGCCCCTTCAGGCTGCTGGGTTCTCATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAAATCCAAATTGCCATCTATACCAACTGAAGAAGAACGTATAGAAGCAACAGCAGGCTATGTTGGTGGAGCTTTTGATGTCGAGTCACTTGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAACCAGGCCATTTTGGTAAATGTATATGATGTCACAAACTCTTCTGATCCCCTGGTCATGTATGGCCATCAATATCAAGATTGTGACATGTCTCTTTTGCATGAGAGTAGCCTCGATTTCGGAGATCCATTCAGAAAGCATCTCATGATTTGTAGATATCAGCAGAAGGCTCCCACATCCTGGACTGCCCTGACTACTGCATTCTTATTCTTCGTGATCGGGTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATCGTGAAGGTTGAAGATGATTTTCATGAAATGCAAGTACTGAAAGTTCGAGCGGAGGCTGCTGATGTTGCAAAATCCCAGTTTCTTGCAACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATTCTCGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAACGAGGTTCTTGACCGGGCAAAAATTGAAGCGGGAAAGTTAGAACTGGAAGCAGTTCCGTTCGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCTGAGAAGTCCAGACAAAAGGGTCTGGAGTTGGCAGTTTTTGTTTCTGACAAAGTTCCAGAAATTGTAATTGGAGATCCAGGAAGATTCAGACAAATCATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGAGGACATATATTTGTTAAAGTACATCTAGCTGATCACTCAAAAGGCTCCATTGACTCAAAATATGTCAATGGAATATCTGACAGTAACTTGTTTAAATCGGATGGTCATGAATTTCAAACTTTAAGTGGACGTGAGGCAGCTGATGATCAGAACAATTGGGATAACTTTAAACATCTAATTGCTGATGAGAACTTCCAGTCGAATGCCGCTCCAAACAACCCAACAGCAACAGTTACCAATGAATGTTGTGGTCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTTTTACATGCCCAAGATCGAGTTTTCATGCCCTTCATGCAAGCAGATAGCTCGACCTCCCGAAATTATGGAGGAACTGGTATAGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATAGGTGGTCAGATCAACTTCATAAGCCGACCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTTTTAGGAAAATGTAAGAAAAACTCGATCAATGATATGAAAAAACCCAACTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATAATAGTTGACAGAAAACCAGTTAGAGCTTCTGTAACCAGATATCATTTGAAGAGACTCGGTATGATAGTTGAAGTCACCAGTAGCATCAACATCGCAGCCTCTTTATGCAGAGAAAATGGCTCTACCGTACCAGGAAACACAATCCTTCCAGATATGATCTTAATTGAAAAAGATACATTAAACTCTGATGAGGAATGTGGGATCATTCATCAACTGAACTGGAAACTGAACGGGAATTCGTTCAAGTTACCGAAGCTGATCCTTCTCGCTACGAATATTACCACTGCAGAAGTAGACAAGGCAAGGGCAGCAGGTTTTGCAGACACTGTGATCATGAAACCGTTGAGGGCGAGTATGGTGGCTGCCTGTCTTCAACAAGTACTTGAGGTTAAGAATCAGAGACAGGGAAGGGGCCTACCGAACGGTTCTGCTTTCCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACAGAGTAAACCGTAGGGTCGCTGCAGGCGCTCTGAAGAAATTTGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAAGCTGCTCTGAAGTTGCTTCAGCTACCGCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCGACTCGTCTTATCAGGATGATGGAGAGCAAGGAAAACGAAGGAGGATCATCTGCAGCAGAAGGCAAGTGGCATATACCGATATTAGCAATGACTGCAGACGTGATTCATGCTACGTATGACAAGTGCCTGAAGTGCGGAATGGATGGCTATGTCTCGAAACCCTTTGAGGAAGAAAATCTATACAAGGAAGTTGCCAAGTTTTTCAAAAAATCATAG 2961 42.62 MGMKMQQRQNSAAKWNEQMGTTNKGYTFVQANRAWLRKYLLLWIMGMAFISMLIYNGMDADIKVRRNEVLGSMCEERARMLQDQFSVSVNHVHALAVLVSTFHYFKSPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSIPTEEERIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDCDMSLLHESSLDFGDPFRKHLMICRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQVLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLADHSKGSIDSKYVNGISDSNLFKSDGHEFQTLSGREAADDQNNWDNFKHLIADENFQSNAAPNNPTATVTNECCGHVTLMVSVEDTGIGILLHAQDRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELIGGQINFISRPQIGSTFSFTAVLGKCKKNSINDMKKPNSEELPPSFRGMKAIIVDRKPVRASVTRYHLKRLGMIVEVTSSINIAASLCRENGSTVPGNTILPDMILIEKDTLNSDEECGIIHQLNWKLNGNSFKLPKLILLATNITTAEVDKARAAGFADTVIMKPLRASMVAACLQQVLEVKNQRQGRGLPNGSAFLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRMMESKENEGGSSAAEGKWHIPILAMTADVIHATYDKCLKCGMDGYVSKPFEEENLYKEVAKFFKKS 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 73208730 73215955 + Hsped.02g26000.1 Hepe02g2600 564101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2600 986 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 585 672 IPR003594 -
Hepe02g2600 986 ProSiteProfiles Response regulatory domain profile. 854 983 IPR001789 GO:0000160(InterPro)
Hepe02g2600 986 Gene3D CHASE domain 111 326 IPR042240 -
Hepe02g2600 986 SUPERFAMILY CheY-like 852 982 IPR011006 -
Hepe02g2600 986 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 446 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g2600 986 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 983 IPR050956 -
Hepe02g2600 986 SMART CHASE_2 107 292 IPR006189 -
Hepe02g2600 986 SMART HisKA_10 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g2600 986 Gene3D - 58 110 - -
Hepe02g2600 986 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 672 IPR036890 -
Hepe02g2600 986 Pfam CHASE domain 110 290 IPR006189 -
Hepe02g2600 986 Pfam Response regulator receiver domain 855 979 IPR001789 GO:0000160(InterPro)
Hepe02g2600 986 FunFam Histidine kinase 4 352 443 - -
Hepe02g2600 986 CDD HisKA 380 441 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g2600 986 ProSiteProfiles Response regulatory domain profile. 702 832 IPR001789 GO:0000160(InterPro)
Hepe02g2600 986 SUPERFAMILY CheY-like 697 834 IPR011006 -
Hepe02g2600 986 SMART HKATPase_4 492 677 IPR003594 -
Hepe02g2600 986 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Hepe02g2600 986 CDD HATPase_EvgS-ArcB-TorS-like 497 675 - -
Hepe02g2600 986 ProSiteProfiles Histidine kinase domain profile. 387 677 IPR005467 -
Hepe02g2600 986 CDD REC_hyHK_CKI1_RcsC-like 855 979 - -
Hepe02g2600 986 Gene3D - 444 680 IPR036890 -
Hepe02g2600 986 SMART REC_2 853 979 IPR001789 GO:0000160(InterPro)
Hepe02g2600 986 Gene3D - 353 443 - -
Hepe02g2600 986 Coils Coil 430 450 - -
Hepe02g2600 986 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g2600 986 Gene3D - 848 986 - -
Hepe02g2600 986 Gene3D - 696 840 - -
Hepe02g2600 986 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe02g2600 986 PRINTS Bacterial sensor protein C-terminal signature 620 630 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe02g2600 986 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe02g2600 986 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe02g2600 986 FunFam Histidine kinase 4 111 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0254 Hepe-Chr1:38899143 Hepe02g2600 Hepe-Chr2:73208730 0.0 dispersed
Hepe02g2600 Hepe-Chr2:73208730 Hepe08g0395 Hepe-Chr8:3532040 0.0 dispersed
Hepe02g2600 Hepe-Chr2:73208730 Hepe03g1107 Hepe-Chr3:63614763 0.0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55111 PF02518 HATPase_c 1.30E-30 CL0025 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2600 K14489 - csv:101209777 1801.95