Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2626 ATGGATGATGCTGATGATATCTATATGGCTTCTTGGACGGGAACTATTATTGGGCCACCTAATACTGTTCATGAAGGGCGCATTTATCAACTCAAGCTATTCTGTGGACAGGATTATCCTGATAATCCTCCAAACGTTAGATTTCAATCTCGGGTTAATATGACCTGTGTCGATCCAGAAACTGGGGTGGTGGAACCAAGCCATTTCCCCATGCTCGCTAATTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAATTGAAGAAAGAAATGACTTCTCCCCAGAATAGGAGGCTAAGTCAGCCCTCTGAAGGCAATGAAGATGGACGAATAGACCAAAAAGGGCTAGTGTTGAAATGTTGCATTCTTTAA 375 42.67 MDDADDIYMASWTGTIIGPPNTVHEGRIYQLKLFCGQDYPDNPPNVRFQSRVNMTCVDPETGVVEPSHFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 73616807 73623189 + Hsped.02g26260.1 Hepe02g2626 564127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2626 124 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 124 IPR000608 -
Hepe02g2626 124 Pfam Ubiquitin-conjugating enzyme 8 99 IPR000608 -
Hepe02g2626 124 MobiDBLite consensus disorder prediction 91 111 - -
Hepe02g2626 124 SMART ubc_7 1 123 - -
Hepe02g2626 124 SUPERFAMILY UBC-like 3 106 IPR016135 -
Hepe02g2626 124 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 9 99 - GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0006301(PANTHER)|GO:0070534(PANTHER)
Hepe02g2626 124 Gene3D Ubiquitin Conjugating Enzyme 1 109 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2626 K10704 - - csv:101209154 255.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2626 Hepe-Chr2:73616807 Hepe05g0418 Hepe-Chr5:5250120 1.21e-57 dispersed
Hepe01g0587 Hepe-Chr1:66868285 Hepe02g2626 Hepe-Chr2:73616807 2.81e-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000459 4 2 3 5 4 3 6 2 3 2 3 3 6 2 3 5 3 7 6 3 3 3 3 3 2 2 2 18 4 3 118