Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2628 ATGGGTGACATGAAGGACAAGGTCAAGGGTTTCATGAAAAAGTTCAATAATCCCTTGTCCTCATCTTCTTCTGCTAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCGGGGTCGACTAGTTCTATGCCTACCCGTCCATCGCAAAATCCCATTTCAAAGTCGAAGCTGGTTAATCCACCTTCAGATTCCCCGGTAAATTCTAAGCCCCCGGTTGCGAATTCAATTGGCAGTGGTCAAAACAGGTCGGAATTGTCGAATAAATCGGACCCAGATCGTAAAACGTCTGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCGTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACGGCTCTGAAGAAGAGGTTTCGGTGCACGTAGATAGCTGTGTCAATGATAATACAGCCAATAGACCAGCAGATCTGCCCACGAATGTTGCAGAATCTCGAAGCGAATTGGAGGCTTGCGTTGACACTTTCTTATCAGGGAAGCCATCACCAGGTTCATTGGAAATTATTCTGAAACTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGTCTTAGCAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTTGGGGGAGTGGAATTGTTGGAGTTTGTGGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAACCATGGAAGTTCCAACAGAGGAAGAAATTAACATATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGGAAAAGAAAGGCAGCACTGCATCTATGGCTTCAACTCAGGTTGATGAACTGATTGAACCAAAGAAGGTGGACAGACAGATTCGAGTATTCTTTGCTGTCCCTGAAAACATTGCAGCACACATTGAGCTACCAGACTCCTTCTACAAGCTTTCTGTTGAAGAGGTTAAAAGAGAAACTATAATGAGGAAACAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAGTCGTACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATCCAATTTCCCGATGGCGTGGTACTTCAAGGCGTTTTTTCTCCTCGGGAACGAACAAGTGCTCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCAGTTTGGAGTTCGAGTTGATACATCCTGTCGGTGTTAGACGGCGTACAATCGCTCATTTTCCCGCAGGAGCAGAGAAAGCTAAAACACTAGATGATGAGGAGTTAGTCCCTTCAGCTCTTGTCAAGTTTAGACCCATTGAAACAGATTCTGTTGTCTTCACAGGTTTGTGTAATGAACTCCTTGAGATCATTGAGCCACTCGTTGGCGCTTCAGCCGTGGCTCCTCCTGCACGAGTTTAA 1440 43.82 MGDMKDKVKGFMKKFNNPLSSSSSASFKGQGRVLGSSSSGSTSSMPTRPSQNPISKSKLVNPPSDSPVNSKPPVANSIGSGQNRSELSNKSDPDRKTSDGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYGSEEEVSVHVDSCVNDNTANRPADLPTNVAESRSELEACVDTFLSGKPSPGSLEIILKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWATMEVPTEEEINILSKVIDSIDRPKLDEQEKKGSTASMASTQVDELIEPKKVDRQIRVFFAVPENIAAHIELPDSFYKLSVEEVKRETIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPRERTSALYEFVSTALKEPSLEFELIHPVGVRRRTIAHFPAGAEKAKTLDDEELVPSALVKFRPIETDSVVFTGLCNELLEIIEPLVGASAVAPPARV 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 73657068 73661597 + Hsped.02g26280.1 Hepe02g2628 564129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2628 479 SMART ubx_3 356 445 IPR001012 GO:0005515(InterPro)
Hepe02g2628 479 Pfam UBX domain 360 440 IPR001012 GO:0005515(InterPro)
Hepe02g2628 479 Gene3D - 181 266 - -
Hepe02g2628 479 SMART c2hc_5 122 146 IPR006642 GO:0003677(InterPro)|GO:0006281(InterPro)
Hepe02g2628 479 CDD UBX_UBXN6 364 444 - -
Hepe02g2628 479 MobiDBLite consensus disorder prediction 1 103 - -
Hepe02g2628 479 Pfam PUB domain 184 247 IPR018997 -
Hepe02g2628 479 CDD PUB 170 266 - -
Hepe02g2628 479 FunFam UBX domain-containing protein 6 353 444 - -
Hepe02g2628 479 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 469 - GO:0050832(PANTHER)
Hepe02g2628 479 ProSiteProfiles UBX domain profile. 359 443 IPR001012 GO:0005515(InterPro)
Hepe02g2628 479 SUPERFAMILY PUG domain-like 183 244 IPR036339 -
Hepe02g2628 479 Gene3D - 353 445 - -
Hepe02g2628 479 MobiDBLite consensus disorder prediction 15 87 - -
Hepe02g2628 479 SUPERFAMILY Ubiquitin-like 333 443 IPR029071 -
Hepe02g2628 479 SMART PGNneu 183 250 - -
Hepe02g2628 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 154 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2628 Hepe-Chr2:73657068 Hepe08g2157 Hepe-Chr8:60798952 2.33e-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2628 K14011 - csv:101209321 774.622