Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g2639 ATGTTGGCTTCTGCAATTTCAATACCCACCAATTTCCACTTCCCCCTTTCCTATCGCCAACACACACTCTCAAGCACTCGCATGAAGCTTTTTGCACTTTGCGCTACGCGAACTAAACCCACACACCTATCGCCCTTTCTCTATCGTCTACGATTTTGCAGTCGCCAAACAGAATCTCTCTCTAAACGCCTTCTTCGCCGGAGGGTTTGCAGTGATGGTGGTGGTGCCGTTGATTCTACTCAGCACCAGTCTGCAGCTCCTGACATTAAAGATGTACAGAATGATTCTTCTAGTGTTGGACACAGTTACGTGGCATTATTTGTCCGGATGCTCGGCTTAGATCACGATCCTCTCGATAGAGAACAAGCAATAATAGCTTTATGGAAATATTCCCTTGGAGGAAAGAAGCACATAGATGCCATCATGCAGTTTCCTGGATGCCTAAATCTAACAGTAAATCTTCTTAGGTCAGAGTCAATCTCTATGCGTGAAGCTGCTGCTGGCCTTCTACGGTCAATTTCTCTTGTGAACTTATACCGAGATTCAGTTGCAGAAAGTGGAGCAATTGAAGAGATAACTGGCTTGCTTAGTCAACCGTCCTTGACTCCCGAGGTGAAGGAGCAAAGCATATGCGTTTTGTGGAATTTATCAGTAGATGAAAAGCTCAGAATAAAGATTGCAAATACTGATATTCTGCCATTGCTTAGTAAGAATCTTGATGATGAGGACATGAAGGTGAAGGAAGCAGCTGGGGGGGTTTTAGCAAATCTGACTTTGAGCCCATGTAACCATGGGGTTATTGTTGAATCAGGCTTAATTCCTAAACTGGCGTATCAGTTAAAACCTGAGGCAGACAGCTCAAAAATTGTGAGAAAGGAAGCAAGAAATGCATTGCTAGAACTTTCTAAAGATGAATATTATAAAATTCTTGTCATAGAGGAAGGACTGATTCCAGTACCAATTGTTGGTGCTGCTGCCTATAAATCCTTCAGACCAGGCCTGCATTCATGGCCCAGTTTGCCTGATGGCACAGAAATTGAACAATCTTCCAAAGAACCTTCAAGATTTGGTGCCTCTGAATTACTCCTCGGATTAAATGTCGATAATAATGCAAACATAGAAGAAGGCAAGATAAATGCGATTGTTGGACGGGCACAGCAACAATTTCTGGCTCGAATAGGTGCCATAGAATTTGAAGATTTGAAGGACTCTCAATCTGAATCATCTACCAGTAACCATCTTACACTCTTACCTTGGATAGATGGTGTGGCTCGACTAGTTTTGATCCTTGAACTTGAGGATGATAATGCCATAGTGAGGGCTGCAGAGTCGATAGCTGATGCATCTATCAACGAACACATGCGTATTTCATTCAAGGAAGCCGGAGCAATCAAACTTTTAGTAAATCTTTTAGATAATATGAATAATTCAGTCAAAGGGGCTATAATTCAAGCTCTAGAGAGACTGTCAATTAGCAATGTTATTTGCCAGACAATTGAAAATGAAGGTGCACTTGGTCCTTTGCTTAGTATTTTAAAGCTCTCAAGTATCCCTGAAAATGTGACGGAGAAGACCCTCGATATTCTGTCTCGGATCTTGGACCCCAGTAAAGAGATGAAATCAAAGTTTTACAATGGACCAGTTAACGGGTCTCATGGGGGACAACATTCAGAAAGAAATTCTGAAGCTTCTACCAGGAAAGATGTGCTAGATGCTGTTGTTGTTTCTCGCCTCGTTGAGATTTTGAACACCGCATCCCCAAACTTGAAACGCAAAGCTGCTTCTATCCTGGAATTTGTTTCTATTATGGACCCAAGCATGGAAATAATCGATTCCATGGAGATAGAATCTGGTTTGTTGGCTGTTTTCCAGTTAGGAGTTTCAATAGATTCTGATGCTGAAGATTGGCAGCCTGAAAGATATGCCCTTGAAGTTGAGGAAGCCGGTCTTGCAATATCAGCAGCCTCCCGACTACTGACAAAACTTTTAGATTTTGAGAAGTTCTGCCACAAAATAAACTCCGCCCATTTCACTAATTTGCTTCGTCGAATCGTGAAGTTGGATATTCCCATTCAACACAAAGATTGGATTGCTGCTTGCCTAGTGAAAGTCAGCTCTGTTTCGGCTCCGAACATAGATTCCAGGGATCCTATCAACATGGAGGTCACTTTGTATGAAACTATACCGAGACTTATTCAGCAGATCAACAGCTCCTTCTCCATGGAAGTTCAAGAATCTGCTGTTGTGGAGCTGAACAGAATAGTCTCAGAGGGAATAGTCAATGCTACCCAAGCCGTTGCTTCTAAAGGCGGTATCTTTCCATTGGTAAAGCTGATTGATGAAGGAAGTGAGAGGGCGACAGAAGCAGCCTTAGCCATACTGTATAATCTGAGCATGGACAGTGAAAATCATCCAGCAATTTTAGCTGCTGGAGCAGTGCCAGCGTTGAGGAGAATCGTTCTATCCCAACGAGCACAGTGGCGGCGAGCTCTTCATTTGTTGAGGACACTGCCTACATGA 2520 42.9 MLASAISIPTNFHFPLSYRQHTLSSTRMKLFALCATRTKPTHLSPFLYRLRFCSRQTESLSKRLLRRRVCSDGGGAVDSTQHQSAAPDIKDVQNDSSSVGHSYVALFVRMLGLDHDPLDREQAIIALWKYSLGGKKHIDAIMQFPGCLNLTVNLLRSESISMREAAAGLLRSISLVNLYRDSVAESGAIEEITGLLSQPSLTPEVKEQSICVLWNLSVDEKLRIKIANTDILPLLSKNLDDEDMKVKEAAGGVLANLTLSPCNHGVIVESGLIPKLAYQLKPEADSSKIVRKEARNALLELSKDEYYKILVIEEGLIPVPIVGAAAYKSFRPGLHSWPSLPDGTEIEQSSKEPSRFGASELLLGLNVDNNANIEEGKINAIVGRAQQQFLARIGAIEFEDLKDSQSESSTSNHLTLLPWIDGVARLVLILELEDDNAIVRAAESIADASINEHMRISFKEAGAIKLLVNLLDNMNNSVKGAIIQALERLSISNVICQTIENEGALGPLLSILKLSSIPENVTEKTLDILSRILDPSKEMKSKFYNGPVNGSHGGQHSERNSEASTRKDVLDAVVVSRLVEILNTASPNLKRKAASILEFVSIMDPSMEIIDSMEIESGLLAVFQLGVSIDSDAEDWQPERYALEVEEAGLAISAASRLLTKLLDFEKFCHKINSAHFTNLLRRIVKLDIPIQHKDWIAACLVKVSSVSAPNIDSRDPINMEVTLYETIPRLIQQINSSFSMEVQESAVVELNRIVSEGIVNATQAVASKGGIFPLVKLIDEGSERATEAALAILYNLSMDSENHPAILAAGAVPALRRIVLSQRAQWRRALHLLRTLPT 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 73907356 73914093 - Hsped.02g26390.1 Hepe02g2639 564140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g2639 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 187 220 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 Gene3D - 399 623 IPR011989 -
Hepe02g2639 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 770 812 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 MobiDBLite consensus disorder prediction 543 565 - -
Hepe02g2639 839 SUPERFAMILY ARM repeat 104 535 IPR016024 -
Hepe02g2639 839 Gene3D - 633 838 IPR011989 -
Hepe02g2639 839 Gene3D - 65 326 IPR011989 -
Hepe02g2639 839 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 49 839 - -
Hepe02g2639 839 SUPERFAMILY ARM repeat 716 828 IPR016024 -
Hepe02g2639 839 SMART arm_5 759 799 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 SMART arm_5 492 534 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 SMART arm_5 219 259 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 SMART arm_5 176 218 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 SMART arm_5 260 303 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 SMART arm_5 451 491 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 SMART arm_5 561 602 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 SMART arm_5 800 839 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 SMART arm_5 135 175 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 SMART arm_5 714 756 IPR000225 GO:0005515(InterPro)
Hepe02g2639 839 MobiDBLite consensus disorder prediction 76 95 - -
Hepe02g2639 839 MobiDBLite consensus disorder prediction 73 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g2639 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30